Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq216 140 3e-28 seq528 127 2e-24 seq15 122 8e-23 >seq216 Length=89640 Score = 140 bits (154), Expect = 3e-28 Identities = 175/239 (73%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 26760 TCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTA 26819 |||| || |||||| | ||||| || ||||| || |||||| | || ||| ||||| | Sbjct 83505 TCAAGAAACATGCAAATTTTTGTGAAGACATTGACAGGAAAAACAATTACCCTCGAAGTC 83446 Query 26820 GAATCAAACG---ACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATA 26876 ||| |||| |||| || || || || ||||| ||| || || ||||| || Sbjct 83445 GAA---AACGCAGACACAATTGAATCTGTGAAGCAAAAAATTCAAGATAAGGAAGGAATC 83389 Query 26877 CCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTC 26936 ||||| ||||| |||||||| |||| || || |||||||||||||||| ||||| || Sbjct 83388 CCTCCGGATCAGCAAAGACTTATTTTCGCAGGAAAACAACTCGAAGATGGTAGAACTCTC 83329 Query 26937 AGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| ||||| ||||||||| | || | ||||| || |||||||| | || || Sbjct 83328 CAGGACTACAACATCCAAAAAGAAGCCACATTGCATCTTGTGTTGAGACTTCGTGGTGG 83270 >seq528 Length=44320 Score = 127 bits (140), Expect = 2e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| || ||||| |||||||| | |||||| | || | ||| Sbjct 9457 AATGCAAATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTCGAAAATGC 9398 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||| || || || || ||||||||| || || ||||| || ||||| ||||| Sbjct 9397 AGACACTATTGAATCTGTGAAGCAAAAGATTCAGGATAAGGAAGGAATTCCTCCAGATCA 9338 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG-AAACGTCAGCGACTATA 26946 ||||||||| || | || || |||||||||||||||| | | | || ||| || |||| Sbjct 9337 ACAAAGACTTATCTTCGCTGGAAAACAACTCGAAGATGGTCGCACACTTCA-AGATTATA 9279 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 | |||||||| ||| |||| |||| ||||||| Sbjct 9278 ATATTCAAAAGGAAGCTACACTCCACTTGGTCCT 9245 >seq15 Length=259596 Score = 122 bits (134), Expect = 8e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| || ||||| |||||||| | |||||| | || | ||| Sbjct 136239 AATGCAAATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTCGAAAATGC 136180 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || |||||||| || || ||||| ||| || || ||||| || ||||| ||||| Sbjct 136179 AGATACCATCGAATCTGTGAAGCAAAAAATTCAGGATAAGGAAGGAATTCCTCCAGATCA 136120 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG-AAACGTCAGCGACTATA 26946 ||||||||| || | || || |||||||||||||||| | | | || ||| || |||| Sbjct 136119 ACAAAGACTTATCTTCGCTGGAAAACAACTCGAAGATGGTCGTACACTTCA-AGATTATA 136061 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 | |||||||| ||| |||| |||| |||| || Sbjct 136060 ATATTCAAAAGGAAGCTACACTCCACTTGGTGCT 136027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478649865028400