Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq216 129 5e-25 seq15 114 1e-20 seq528 113 4e-20 >seq216 Length=89640 Score = 129 bits (142), Expect = 5e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || |||||| | ||||| || ||||| || |||||| | |||||| |||||||||| | Sbjct 83499 AACATGCAAATTTTTGTGAAGACATTGACAGGAAAAACAATTACCCTCGAAGTCGAAAAC 83440 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||| || || || || ||||| ||| || || ||||| || ||||| ||| Sbjct 83439 GCAGACACAATTGAATCTGTGAAGCAAAAAATTCAAGATAAGGAAGGAATCCCTCCGGAT 83380 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || || ||||| |||| || || || ||||||||||||| |||| || || || Sbjct 83379 CAGCAAAGACTTATTTTCGCAGGAAAACAACTCGAAGATGGTAGAACTCTCCAGGACTAC 83320 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206 ||||| ||||||||| | ||| | ||| | ||||| ||| Sbjct 83319 AACATCCAAAAAGAAGCCACATTGCATCTTGTGTTGAGA 83281 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || ||||||||| | || ||| | || || || | Sbjct 83268 ATGCAGATCTTTGTGAAAACTTTGACTGGAAAAACCATCACCCTTGAGGTTGAAAACGCT 83209 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || ||| ||| || || |||||| ||||| ||||| || ||||| || ||| Sbjct 83208 GACACAATTGAGTCAGTTAAGCAGAAGATTCAAGACAAGGAAGGTATTCCTCCGGACCAA 83149 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| || | || || |||||| | ||||| | | | | || || || Sbjct 83148 CAGAGACTTATCTTCGCTGGAAAGCAATTGGAAGACGGTCGCACATTGCAAGACTACAAT 83089 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || ||||| || | ||| | ||| | ||| | ||||||||||||||| Sbjct 83088 ATCCAAAAGGAGGCAACACTCCATCTTGTGCTGAGATTGAGAGGAGGA 83041 >seq15 Length=259596 Score = 114 bits (126), Expect = 1e-20 Identities = 154/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || ||||| |||||||| | || ||| | || ||||| Sbjct 136239 AATGCAAATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTCGAAAATGC 136180 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || |||||||| || || ||||| ||| || || ||||| || ||||| ||||| Sbjct 136179 AGATACCATCGAATCTGTGAAGCAAAAAATTCAGGATAAGGAAGGAATTCCTCCAGATCA 136120 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGTCAGCGATTATA 24168 ||| ||||| || | || || || |||||||||||| | | | || ||| ||||||| Sbjct 136119 ACAAAGACTTATCTTCGCTGGAAAACAACTCGAAGATGGTCGTACACTTCA-AGATTATA 136061 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 | |||||||| ||| ||||| | || || ||| Sbjct 136060 ATATTCAAAAGGAAGCTACACTCCACTTGGTG 136029 >seq528 Length=44320 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || ||||| |||||||| | || ||| | || ||||| Sbjct 9457 AATGCAAATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTCGAAAATGC 9398 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || || || ||||||||| || || ||||| || ||||| ||||| Sbjct 9397 AGACACTATTGAATCTGTGAAGCAAAAGATTCAGGATAAGGAAGGAATTCCTCCAGATCA 9338 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGTCAGCGATTATA 24168 ||| ||||| || | || || || |||||||||||| | | | || ||| ||||||| Sbjct 9337 ACAAAGACTTATCTTCGCTGGAAAACAACTCGAAGATGGTCGCACACTTCA-AGATTATA 9279 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199 | |||||||| ||| ||||| | || || || Sbjct 9278 ATATTCAAAAGGAAGCTACACTCCACTTGGT 9248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429925022524725