Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq216 102 7e-17 >seq216 Length=89640 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| | ||||| || | ||| || || | ||||||||| || |||||||| | Sbjct 83042 CCTCCTCTCAATCTCAGCACAAGATGGAGTGTTGCCTCCTTTTGGATATTGTAGTCTTGC 83101 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || |||| |||||||| || || || | ||||| | |||||||||| ||| Sbjct 83102 AATGTGCGACCGTCTTCCAATTGCTTTCCAGCGAAGATAAGTCTCTGTTGGTCCGGAGGA 83161 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACA-GTGTCGCCGGGCTCCGT 16887 | || || ||||| ||| | |||||| || || | || ||||| || || Sbjct 83162 ATACCTTCCTTGTCTTGAATCTTCTGCTTAAC-TGACTCAATTGTGTCAGCGTTTTCAAC 83220 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||||||||| |||| ||||| ||||| |||||||| Sbjct 83221 CTCAAGGGTGATGGTTTTTCCAGTCAAAGTTTTCACAAAGATCTGCAT 83268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405077656964050