Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq15 113 3e-20 seq528 95.1 8e-15 seq216 93.3 3e-14 >seq15 Length=259596 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGT-GCTCTCCTTTTGAATATTGTAATCAG 38148 |||||| | | ||| | |||||| || || || ||| |||||||||||||| ||||| Sbjct 136011 ACCACCACGAAGACGAAGCACCAAGTGGAGTGTAGCT-TCCTTTTGAATATTATAATCTT 136069 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | ||| | || || | ||||||||| || || || || | ||||||||| | | Sbjct 136070 GAAGTGTACGACCATCTTCGAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAG 136129 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| || ||| |||||||||||||||| | || |||||| || |||| | Sbjct 136130 GAATTCCTTCCTTATCCTGAATTTTTTGCTTCACAGATTCGATGGTATCTGCATTTTCGA 136189 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || ||||| || ||||| || || ||||| Sbjct 136190 CCTCAAGGGTGATGGTCTTTCCAGTCAATGTCTTCACAAAGATTTGCAT 136238 >seq528 Length=44320 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGT-GCTCTCCTTTTGAATATTGTAATCAG 38148 |||||| | | ||| | ||||| || || || ||| |||||||||||||| ||||| Sbjct 9229 ACCACCACGAAGACGAAGGACCAAGTGGAGTGTAGCT-TCCTTTTGAATATTATAATCTT 9287 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | || | || || | ||||||||| || || || || | ||||||||| | | Sbjct 9288 GAAGTGTGCGACCATCTTCGAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAG 9347 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| || ||| ||| |||||||||||| | | ||| ||| || |||| | Sbjct 9348 GAATTCCTTCCTTATCCTGAATCTTTTGCTTCACAGATTCAATAGTGTCTGCATTTTCGA 9407 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || ||||| || ||||| || || ||||| Sbjct 9408 CCTCAAGGGTGATGGTCTTTCCAGTCAATGTCTTCACAAAGATTTGCAT 9456 >seq216 Length=89640 Score = 93.3 bits (102), Expect = 3e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || || | ||||||||| || || || || | ||| ||||| | |||| ||||| || Sbjct 83342 TCTTCGAGTTGTTTTCCTGCGAAAATAAGTCTTTGCTGATCCGGAGGGATTCCTTCCTTA 83401 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 || |||||||||||||||| | | || ||| | |||| ||||| | ||||| Sbjct 83402 TCTTGAATTTTTTGCTTCACAGATTCAATTGTGTCTGCGTTTTCGACTTCGAGGGTAATT 83461 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 ||||| || ||||| || ||||| || || ||||||||| Sbjct 83462 GTTTTTCCTGTCAATGTCTTCACAAAAATTTGCATGTTT 83500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334938647855945