Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq216 96.9 3e-15 seq15 93.3 4e-14 >seq216 Length=89640 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 111183 AAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACC 111242 ||| |||||||||||||| || || |||| || ||||| |||||| | ||| ||| Sbjct 83500 AAACATGCAAATTTTTGTGAAGACATTGACAGGAAAAACAATTACCCTCGAAGTCGAAAA 83441 Query 111243 CAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGA 111302 | || | ||| || || ||||||||| || || ||||| | || || Sbjct 83440 CGCAGACACAATTGAATCTGTGAAGCAAAAAATTCAAGATAAGGAAGGAATCCCTCCGGA 83381 Query 111303 TCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 111362 ||| ||||| ||||||| || || |||||| | |||||| || |||| | || || Sbjct 83380 TCAGCAAAGACTTATTTTCGCAGGAAAACAACTCGAAGATGGTAGAACTCTCCAGGACTA 83321 Query 111363 TAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || ||||||||| | ||| | ||| | |||||| | || || ||||| Sbjct 83320 CAACATCCAAAAAGAAGCCACATTGCATCTTGTGTTGAGACTTCGTGGTGG 83270 >seq15 Length=259596 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/237 (68%), Gaps = 18/237 (8%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACC------GTGGAAA---C 111236 ||||||||| ||||| || || |||| || || ||||| ||| || |||| | Sbjct 136239 AATGCAAATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTCGAAAATGC 136180 Query 111237 GGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCC 111296 || ||| ||| ||||| || ||||||||| || || ||||| |||| Sbjct 136179 AGATACCATCGAATCTGTG---------AAGCAAAAAATTCAGGATAAGGAAGGAATTCC 136129 Query 111297 CGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGC 111356 ||||||||||| ||||| | || || |||||| | |||||| | || | Sbjct 136128 TCCAGATCAACAAAGACTTATCTTCGCTGGAAAACAACTCGAAGATGGTCGTACACTTCA 136069 Query 111357 CGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||||||||||| ||||| ||| ||||||| || || ||| | ||||| || ||||| Sbjct 136068 AGATTATAATATTCAAAAGGAAGCTACACTCCACTTGGTGCTTCGTCTTCGTGGTGG 136012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423029198599000