Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq216 122 7e-23 seq15 104 2e-17 >seq216 Length=89640 Score = 122 bits (134), Expect = 7e-23 Identities = 178/250 (71%), Gaps = 4/250 (2%) Strand=Plus/Minus Query 22199 AGTTTTATACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCA 22258 ||||| || ||| ||| |||||||||||||| || || || || || ||||| | | Sbjct 83516 AGTTTGATTCATCAAGAAACATGCAAATTTTTGTGAAGACATTGACAGGAAAAACAATTA 83457 Query 22259 CTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGG 22318 | || ||||| |||| | | || || | || | | || |||||||||||||| |||| Sbjct 83456 CCCTCGAAGTCGAAAACGCAGACACAATTGAATCTGTGAAGCAAAAAATTCAAGATAAGG 83397 Query 22319 AGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACC 22378 | || || || || ||||| ||| | ||||| || || || ||||| | || ||| Sbjct 83396 AAGGAATCCCTCCGGATCAGCAAAGACTTATTTTCGCAGGAAAACAACTCGAAGATGGTA 83337 Query 22379 GCACCGTCTCC--GATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 | || ||||| || |||||||| ||||||||| |||| | ||| | || ||| || | Sbjct 83336 GAAC--TCTCCAGGACTACAACATCCAAAAAGAAGCCACATTGCATCTTGTGTTGAGACT 83279 Query 22437 GCGCGGAGGT 22446 || || ||| Sbjct 83278 TCGTGGTGGT 83269 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| |||||||| || || ||||| |||| ||||| || |||| | | Sbjct 83268 ATGCAGATCTTTGTGAAAACTTTGACTGGAAAAACCATCACCCTTGAGGTTGAAAACGCT 83209 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | || || || |||||||||||||| |||||||| || || ||| Sbjct 83208 GACACAATTGAGTCAGTTAAGCAGAAGATTCAAGACAAGGAAGGTATTCCTCCGGACCAA 83149 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| || || || || || || || || ||||| | || ||||| Sbjct 83148 CAGAGACTTATCTTCGCTGGAAAGCAATTGGAAGACGGTCGCACATTGCAAGACTACAAT 83089 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| || | || | ||| | || || ||||| | ||||| Sbjct 83088 ATCCAAAAGGAGGCAACACTCCATCTTGTGCTGAGATTGAGAGGAGG 83042 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || || || || ||||| | || |||||||| |||| | | Sbjct 83040 ATGCAAATTTTTGTGAAGACATTGACTGGAAAAACAATTACCCTTGAAGTCGAAAACGCA 82981 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 |||||| | || | | ||||| || ||||| || || ||||||||||| || Sbjct 82980 GATACCATTGAATCTGTGAAACAGAAGATTCAGGATAAAGAGGGTATTCCTCC 82928 >seq15 Length=259596 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || || || || || |||| ||||| || |||| | Sbjct 136238 ATGCAAATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTCGAAAATGCA 136179 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || ||||||||||| || ||||| || ||||| || |||||| Sbjct 136178 GATACCATCGAATCTGTGAAGCAAAAAATTCAGGATAAGGAAGGAATTCCTCCAGATCAA 136119 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| || || || ||||| | || ||| || || | ||||| || Sbjct 136118 CAAAGACTTATCTTCGCTGGAAAACAACTCGAAGATGGTCGTACACTTCAAGATTATAAT 136059 Query 22399 ATTCAAAAAGAA 22410 |||||||| ||| Sbjct 136058 ATTCAAAAGGAA 136047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419717283163675