Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1015 89.7 1e-12 seq556 89.7 1e-12 seq462 89.7 1e-12 seq281 89.7 1e-12 seq260 89.7 1e-12 >seq1015 Length=20489 Score = 89.7 bits (98), Expect = 1e-12 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGT-CGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||| |||||||||| |||||||||| ||||||||||||||| ||||| |||||||| Sbjct 8403 AGCCCGCTTAGCTCAGTACGGTAGAGCGTTAGACTCTTAATCTAACGGTCGAGGGTTCGA 8462 Query 142562 GCCCCACATCGGGC 142575 |||| || ||||| Sbjct 8463 CCCCCTCAGCGGGC 8476 >seq556 Length=42770 Score = 89.7 bits (98), Expect = 1e-12 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGT-CGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||| |||||||||| |||||||||| ||||||||||||||| ||||| |||||||| Sbjct 10984 AGCCCGCTTAGCTCAGTACGGTAGAGCGTTAGACTCTTAATCTAACGGTCGAGGGTTCGA 11043 Query 142562 GCCCCACATCGGGC 142575 |||| || ||||| Sbjct 11044 CCCCCTCAGCGGGC 11057 >seq462 Length=51132 Score = 89.7 bits (98), Expect = 1e-12 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGT-CGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||| |||||||||| |||||||||| ||||||||||||||| ||||| |||||||| Sbjct 23918 AGCCCGCTTAGCTCAGTACGGTAGAGCGTTAGACTCTTAATCTAACGGTCGAGGGTTCGA 23977 Query 142562 GCCCCACATCGGGC 142575 |||| || ||||| Sbjct 23978 CCCCCTCAGCGGGC 23991 >seq281 Length=75506 Score = 89.7 bits (98), Expect = 1e-12 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGT-CGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||| |||||||||| |||||||||| ||||||||||||||| ||||| |||||||| Sbjct 54901 AGCCCGCTTAGCTCAGTACGGTAGAGCGTTAGACTCTTAATCTAACGGTCGAGGGTTCGA 54842 Query 142562 GCCCCACATCGGGC 142575 |||| || ||||| Sbjct 54841 CCCCCTCAGCGGGC 54828 >seq260 Length=77079 Score = 89.7 bits (98), Expect = 1e-12 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGT-CGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||| |||||||||| |||||||||| ||||||||||||||| ||||| |||||||| Sbjct 35219 AGCCCGCTTAGCTCAGTACGGTAGAGCGTTAGACTCTTAATCTAACGGTCGAGGGTTCGA 35278 Query 142562 GCCCCACATCGGGC 142575 |||| || ||||| Sbjct 35279 CCCCCTCAGCGGGC 35292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027809210611895