Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq528 149 1e-30 seq15 145 1e-29 seq216 138 2e-27 >seq528 Length=44320 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||||| || || | || ||||| || |||||||| Sbjct 9230 CCACCACGAAGACGAAGGACCAAGTGGAGTGTAGCTTCCTTTTGAATATTATAATCTTGA 9289 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | |||||||| | || || || ||||| || ||||||||||| || || ||| Sbjct 9290 AGTGTGCGACCATCTTCGAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGA 9349 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || ||||||||| ||| || | || || |||||||| ||| || Sbjct 9350 ATTCCTTCCTTATCCTGAATCTTTTGCTTCACAGATTCAATAGTGTCTGCATTTTCGACC 9409 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | ||||||||| ||||| || | ||||| || || || |||||||| Sbjct 9410 TCAAGGGTGATGGTCTTTCCAGTCAATGTCTTCACAAAGATTTGCATTAT 9459 >seq15 Length=259596 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||||| || || | || ||||| || |||||||| Sbjct 136012 CCACCACGAAGACGAAGCACCAAGTGGAGTGTAGCTTCCTTTTGAATATTATAATCTTGA 136071 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | |||||||| | || || || ||||| || ||||||||||| || || ||| Sbjct 136072 AGTGTACGACCATCTTCGAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGA 136131 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || ||||| ||| ||| || | |||||||| ||||| ||| || Sbjct 136132 ATTCCTTCCTTATCCTGAATTTTTTGCTTCACAGATTCGATGGTATCTGCATTTTCGACC 136191 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | ||||||||| ||||| || | ||||| || || || |||||| Sbjct 136192 TCAAGGGTGATGGTCTTTCCAGTCAATGTCTTCACAAAGATTTGCATT 136239 >seq216 Length=89640 Score = 138 bits (152), Expect = 2e-27 Identities = 156/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || || | ||| |||||||| || || || | ||| | || ||||| | Sbjct 83061 CAAGATGGAGTGTTGCCTCCTTTTGGATATTGTAGTCTTGCAATGTGCGACCGTCTTCCA 83120 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 | ||||| || ||||| || ||||| |||||||| || ||||| |||||||||||||||| Sbjct 83121 ATTGCTTTCCAGCGAAGATAAGTCTCTGTTGGTCCGGAGGAATACCTTCCTTGTCTTGAA 83180 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| ||| || | ||| || ||||| || ||| || || | |||||||||||||| Sbjct 83181 TCTTCTGCTTAACTGACTCAATTGTGTCAGCGTTTTCAACCTCAAGGGTGATGGTTTTTC 83240 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || | || || || || |||||||| Sbjct 83241 CAGTCAAAGTTTTCACAAAGATCTGCAT 83268 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| | ||| || | || | |||| |||||||||||||| || || | Sbjct 83270 CCACCACGAAGTCTCAACACAAGATGCAATGTGGCTTCTTTTTGGATGTTGTAGTCCTGG 83329 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || |||||||| | || || || ||||| || |||||||| || || || || Sbjct 83330 AGAGTTCTACCATCTTCGAGTTGTTTTCCTGCGAAAATAAGTCTTTGCTGATCCGGAGGG 83389 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| |||||||| ||| ||| || | || || |||||||| ||| ||| Sbjct 83390 ATTCCTTCCTTATCTTGAATTTTTTGCTTCACAGATTCAATTGTGTCTGCGTTTTCGACT 83449 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || |||||||| || | ||||| || || || ||||| Sbjct 83450 TCGAGGGTAATTGTTTTTCCTGTCAATGTCTTCACAAAAATTTGCAT 83496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921598265013400