Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq216 104 6e-17 seq58 98.7 2e-15 >seq216 Length=89640 Score = 104 bits (114), Expect = 6e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||| | ||| |||||||||||| || ||||| | Sbjct 83270 CCACCACGAAGTCTCAACACAAGATGCAATGTGGCTTCTTTTTGGATGTTGTAGTCCTGG 83329 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || ||||| | ||||||||||||||| || || | || ||| ||| Sbjct 83330 AGAGTTCTACCATCTTCGAGTTGTTTTCCTGCGAAAATAAGTCTTTGCTGATCCGGAGGG 83389 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||| || ||||| ||||| ||| || | || ||| ||| Sbjct 83390 ATTCCTTCCTTATCTTGAATTTTTTGCTTCACAGATTCAATTGTGTCTGCGTTTTCGACT 83449 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || || || || |||| ||||| || || || ||||| Sbjct 83450 TCGAGGGTAATTGTTTTTCCTGTCAATGTCTTCACAAAAATTTGCAT 83496 >seq58 Length=166100 Score = 98.7 bits (108), Expect = 2e-15 Identities = 301/454 (66%), Gaps = 16/454 (4%) Strand=Plus/Minus Query 325151 TTCGTCGACCATCCGGTTCCGATACCACTCGATCCATTCACCAGGATACTCGGAATAACA 325210 ||||| |||||||| ||||| ||||| | ||||| || ||| ||||||| | Sbjct 92334 TTCGTTGACCATCCAGTTCCAATACCGTCTGCACCATTGACAAGGCACATCGGAATGATG 92275 Query 325211 GGCACATAATACTCTGGTTCGAT---CTTATCGCCGTCGTCGTACATATATTTCAGAAGA 325267 || ||||| |||| || ||||| | || || || || | || ||| ||||| | Sbjct 92274 GGAACATACCACTCAGGCTCGATTGGCATA---CCATCATCATCCAGATACTTCAGCAAT 92218 Query 325268 TTGTCGTC--CGTATCGACGAAAACCTGTCGAGTCTGAGGGTTCAGTTTCatatatatat 325325 ||||||| | | |||| || | | ||| | | || ||||| || | | || | Sbjct 92217 CTGTCGTCTTCTTCTCGA--AAGATCAGTCTTGCAAGCGGATTCAGCTTTGTGAAAATGT 92160 Query 325326 atCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCA 325385 | || ||| ||| ||| || ||||| || | | |||||| || || || | Sbjct 92159 AACGAGCAGACGCAGCATCTTTGCCACCTGACAGACGTGTACCGAATTGACCAGAAGG-A 92101 Query 325386 ACAACCAG-TTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCT 325444 |||| || |||||||| ||||||||||| |||| |||||||||| || || || Sbjct 92100 ACAAGAAGATTGATGTTGTTGCTTCCGACGAAATCACGTGCAAGGTTAACAATCGTTGAC 92041 Query 325445 TGCAGAGATGCTTCGCCATGGTGATA-GGCGCTATGCTCTGCAACGTAACCGCTGAACTG 325503 || || || ||| || || || || | | || ||||||||||| || | ||| Sbjct 92040 TGAAGTGACTGTTCACCGTGATGGTATGATGATA-CTTCTGCAACGTATCCAGAAAGCTG 91982 Query 325504 TGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGC-TGAATATATCACTTTCCGTT 325562 ||||| || | || || | | ||| ||||| ||||| | ||||| | || |||| Sbjct 91981 GGCAACTTTAATTTCATTCTTAAGATTACGCTT-AAAGCAGGCATATAAAATCTTTCGTT 91923 Query 325563 GAGAAGGTTTGAAACCATCAACGACCGACGGAAT 325596 | ||| || || |||||||| || || ||||| Sbjct 91922 GTCCAGGCTTAAATCCATCAACAACAGATGGAAT 91889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179622735495410