Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq58 118 2e-21 >seq58 Length=166100 Score = 118 bits (130), Expect = 2e-21 Identities = 305/453 (67%), Gaps = 14/453 (3%) Strand=Plus/Minus Query 297272 TTAGTCGACCAACCGGTACCGATTCCACTCGAACCATTCACCAGAATGCTCGGAATAACA 297331 || || ||||| || || || || || | |||||| || || ||||||| | Sbjct 92334 TTCGTTGACCATCCAGTTCCAATACCGTCTGCACCATTGACAAGGCACATCGGAATGATG 92275 Query 297332 GGCACATAATACTCTGGTTCGATCTTGTCA--CCGTCATCATACAGATATTTCAGAAGAT 297389 || ||||| |||| || ||||| || || || ||||||| |||||| ||||| | Sbjct 92274 GGAACATACCACTCAGGCTCGAT--TGGCATACCATCATCATCCAGATACTTCAGCAATC 92217 Query 297390 TATCGTC--CGTATCGACGAAAACCTGTCGAGTCTGAGGGTTCAGTTTTGTGAAAATATA 297447 | ||||| | | |||| || | | ||| | | || ||||| ||||||||||| || Sbjct 92216 TGTCGTCTTCTTCTCGA--AAGATCAGTCTTGCAAGCGGATTCAGCTTTGTGAAAATGTA 92159 Query 297448 TCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAA 297507 || ||| ||| ||| || ||||| || | | |||||| || || || || Sbjct 92158 ACGAGCAGACGCAGCATCTTTGCCACCTGACAGACGTGTACCGAATTGACCAGAAGG-AA 92100 Query 297508 CAACCAG-TTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTT 297566 ||| || |||||||| ||||||||||| |||| |||||||||| || || || | Sbjct 92099 CAAGAAGATTGATGTTGTTGCTTCCGACGAAATCACGTGCAAGGTTAACAATCGTTGACT 92040 Query 297567 GCAGAGATGCTTCGCCATGGTGATA-GGCGCTATGCTCTGCAACGTAACCGCTGAACTGT 297625 | || || ||| || || || || | | || ||||||||||| || | ||| Sbjct 92039 GAAGTGACTGTTCACCGTGATGGTATGATGATA-CTTCTGCAACGTATCCAGAAAGCTGG 91981 Query 297626 GCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGC-TGAATATATCACTTTCCGTTG 297684 ||||| || | || || | | ||| ||||| ||||| | ||||| | || ||||| Sbjct 91980 GCAACTTTAATTTCATTCTTAAGATTACGCTT-AAAGCAGGCATATAAAATCTTTCGTTG 91922 Query 297685 AGAAGGTTTGAAACCATCAACGACCGACGGAAT 297717 ||| || || |||||||| || || ||||| Sbjct 91921 TCCAGGCTTAAATCCATCAACAACAGATGGAAT 91889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102850396288250