Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq216 113 5e-20 seq15 89.7 5e-13 seq528 86.0 6e-12 >seq216 Length=89640 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | |||||| ||||| ||||| | || | || ||||| || ||||| ||| Sbjct 83042 CCTCCTCTCAATCTCAGCACAAGATGGAGTGTTGCCTCCTTTTGGATATTGTAGTCTTGC 83101 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| ||||||| | ||||| || || | || || | ||| ||||| |||||| Sbjct 83102 AATGTGCGACCGTCTTCCAATTGCTTTCCAGCGAAGATAAGTCTCTGTTGGTCCGGAGGA 83161 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || ||||| || || ||||| || ||| | ||| ||| || || || Sbjct 83162 ATACCTTCCTTGTCTTGAATCTTCTGCTTAACTGACTCAATTGTGTCAGCGTTTTCAACC 83221 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||| || || ||||||||||| || || || ||||| Sbjct 83222 TCAAGGGTGATGGTTTTTCCAGTCAAAGTTTTCACAAAGATCTGCAT 83268 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||| | || | ||||||||| |||||||| || Sbjct 83269 ACCACCACGAAGTCTCAACACAAGATGCAATGTGGCTTCTTTTTGGATGTTGTAGTCCTG 83328 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || | | ||||| || || || || || |||| || | ||||| || ||||| Sbjct 83329 GAGAGTTCTACCATCTTCGAGTTGTTTTCCTGCGAAAATAAGTCTTTGCTGATCCGGAGG 83388 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||||| || ||||| ||||||||||| ||| || | ||| || || || || Sbjct 83389 GATTCCTTCCTTATCTTGAATTTTTTGCTTCACAGATTCAATTGTGTCTGCGTTTTCGAC 83448 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||| | || | || || || ||||| || || || ||||||||||| || Sbjct 83449 TTCGAGGGTAATTGTTTTTCCTGTCAATGTCTTCACAAAAATTTGCATGTT 83499 >seq15 Length=259596 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| | || | || | ||| |||||||| || |||||| | || || | || Sbjct 136026 AAGCACCAAGTGGAGTGTAGCTTCCTTTTGAATATTATAATCTTGAAGTGTACGACCATC 136085 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| || || || || || | || || | || || || |||||||||||||| || || Sbjct 136086 TTCGAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTATC 136145 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || ||||||||||| ||| || | ||||| | || || || | || | ||| Sbjct 136146 CTGAATTTTTTGCTTCACAGATTCGATGGTATCTGCATTTTCGACCTCAAGGGTGATGGT 136205 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| || ||||| || || || || ||||||||| Sbjct 136206 CTTTCCAGTCAATGTCTTCACAAAGATTTGCATT 136239 >seq528 Length=44320 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64252 TTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATA 64311 ||| |||||||| || |||||| | ||||| | ||||| || || || || || | Sbjct 9265 TTCCTTTTGAATATTATAATCTTGAAGTGTGCGACCATCTTCGAGTTGTTTTCCAGCGAA 9324 Query 64312 AATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAAC 64371 || || | || || || |||||||||||||| || || || || |||||||| ||| Sbjct 9325 GATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTATCCTGAATCTTTTGCTTCACAGA 9384 Query 64372 CTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTAC 64431 || | || || | || || || | || | |||||| || ||||| || || || Sbjct 9385 TTCAATAGTGTCTGCATTTTCGACCTCAAGGGTGATGGTCTTTCCAGTCAATGTCTTCAC 9444 Query 64432 GAAAATTTGCATTTTAA 64448 || ||||||||| ||| Sbjct 9445 AAAGATTTGCATTATAA 9461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499631715551800