Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq15 109 5e-19 seq528 98.7 9e-16 >seq15 Length=259596 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | |||| || ||||||||||| ||||| Sbjct 136012 CCACCACGAAGACGAAGCACCAAGTGGAGTGTAGCTTCCTTTTGAATATTATAATCTTGA 136071 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || || |||||||||||| |||| | || || ||||| ||||| Sbjct 136072 AGTGTACGACCATCTTCGAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGA 136131 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||| ||| ||||| ||||| | ||||| ||| || | | | ||||| Sbjct 136132 ATTCCTTCCTTATCCTGAATTTTTTGCTTCACAGATTCGATGGTATCTGCATTTTCGACC 136191 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 127116 || | ||| | || || || |||| || || ||||| || ||||| || Sbjct 136192 TCAAGGGTGATGGTCTTTCCAGTCAATGTCTTCACAAAGATTTGCATTGC 136241 >seq528 Length=44320 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | |||| || ||||||||||| ||||| Sbjct 9230 CCACCACGAAGACGAAGGACCAAGTGGAGTGTAGCTTCCTTTTGAATATTATAATCTTGA 9289 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || || |||||||||||| |||| | || || ||||| ||||| Sbjct 9290 AGTGTGCGACCATCTTCGAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGA 9349 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||| ||| || || ||||| | ||| | ||||| | | | ||||| Sbjct 9350 ATTCCTTCCTTATCCTGAATCTTTTGCTTCACAGATTCAATAGTGTCTGCATTTTCGACC 9409 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || || |||| || || ||||| || ||||| Sbjct 9410 TCAAGGGTGATGGTCTTTCCAGTCAATGTCTTCACAAAGATTTGCAT 9456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475488347822800