Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq216 149 6e-31 seq15 102 7e-17 seq528 95.1 1e-14 >seq216 Length=89640 Score = 149 bits (164), Expect = 6e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || |||||||| ||||||| || | ||| |||||||| || || || Sbjct 83267 ATACCACCACGAAGTCTCAACACAAGATGCAATGTGGCTTCTTTTTGGATGTTGTAGTCC 83326 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || ||| || | ||||||||||||| | || | || |||||| ||||| Sbjct 83327 TGGAGAGTTCTACCATCTTCGAGTTGTTTTCCTGCGAAAATAAGTCTTTGCTGATCCGGA 83386 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| ||||||||||||||||| || | | ||| | ||||| | ||| Sbjct 83387 GGGATTCCTTCCTTATCTTGAATTTTTTGCTTCACAGATTCAATTGTGTCTGCGTTTTCG 83446 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| |||| ||||| || || | || || |||||||||||||| Sbjct 83447 ACTTCGAGGGTAATTGTTTTTCCTGTCAATGTCTTCACAAAAATTTGCAT 83496 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | | |||| ||| ||||| || |||| |||||||||||||| || || Sbjct 83039 ATTCCTCCTCTCAATCTCAGCACAAGATGGAGTGTTGCCTCCTTTTGGATATTGTAGTCT 83098 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | || |||||||| ||||| ||| | || | || || |||||||| Sbjct 83099 TGCAATGTGCGACCGTCTTCCAATTGCTTTCCAGCGAAGATAAGTCTCTGTTGGTCCGGA 83158 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| || |||||||| || || || | | || | ||||| | || Sbjct 83159 GGAATACCTTCCTTGTCTTGAATCTTCTGCTTAACTGACTCAATTGTGTCAGCGTTTTCA 83218 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||||| || || | |||||| ||||| || ||||| Sbjct 83219 ACCTCAAGGGTGATGGTTTTTCCAGTCAAAGTTTTCACAAAGATCTGCAT 83268 >seq15 Length=259596 Score = 102 bits (112), Expect = 7e-17 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACG-GTTTTAGAATCGTCCAATTG 45196 || || || | ||||||||| ||||||||||| ||| | || | ||| || | ||| Sbjct 136036 TGGAGTGTAGCTTCCTTTTGAATATTATAATCT-TGAAGTGTACGACCATCTTCGAGTTG 136094 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 |||||| ||| | || | || ||| || || || ||||| ||||| ||||| |||||||| Sbjct 136095 TTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTATCCTGAATTTT 136154 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||| || | | ||| | ||| || | | ||||| || || || | || || || || Sbjct 136155 TTGCTTCACAGATTCGATGGTATCTGCATTTTCGACCTCAAGGGTGATGGTCTTTCCAGT 136214 Query 45317 TAGAGTTTTTACAAAAATTTGCATCGCG 45344 | || || ||||| |||||||| ||| Sbjct 136215 CAATGTCTTCACAAAGATTTGCATTGCG 136242 >seq528 Length=44320 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACG-GTTTTAGAATCGTCCAATTG 45196 || || || | ||||||||| ||||||||||| ||| | || | ||| || | ||| Sbjct 9254 TGGAGTGTAGCTTCCTTTTGAATATTATAATC-TTGAAGTGTGCGACCATCTTCGAGTTG 9312 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 |||||| ||| | || | || ||| || || || ||||| ||||| ||||| ||||| || Sbjct 9313 TTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTATCCTGAATCTT 9372 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||| || | | ||| | ||||| | | ||||| || || || | || || || || Sbjct 9373 TTGCTTCACAGATTCAATAGTGTCTGCATTTTCGACCTCAAGGGTGATGGTCTTTCCAGT 9432 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | || || ||||| |||||||| Sbjct 9433 CAATGTCTTCACAAAGATTTGCAT 9456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451991363166200