Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq216 104 2e-17 seq15 86.0 6e-12 >seq216 Length=89640 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| | || || |||||||||||| | || || || | | Sbjct 83268 ATGCAGATCTTTGTGAAAACTTTGACTGGAAAAACCATCACCCTTGAGGTTGAAAACGCT 83209 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | |||| | || || | ||||| || || ||||| | |||||| Sbjct 83208 GACACAATTGAGTCAGTTAAGCAGAAGATTCAAGACAAGGAAGGTATTCCTCCGGACCAA 83149 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | || || | ||| || || || |||| |||| ||||| | | |||||||| Sbjct 83148 CAGAGACTTATCTTCGCTGGAAAGCAATTGGAAGACGGTCGCACATTGCAAGACTACAAT 83089 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| || || || ||| | |||||| | |||||||| || Sbjct 83088 ATCCAAAAGGAGGCAACACTCCATCTTGTGCTGAGATTGAGAGGAGG 83042 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| |||||||| || || || || | || || ||||| || ||| |||| ||||| Sbjct 83500 AAACATGCAAATTTTTGTGAAGACATTGACAGGAAAAACAATTACCCTCGAAGTCGAAAA 83441 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | | |||| | || | | || ||||||| | || || || ||||| || | || Sbjct 83440 CGCAGACACAATTGAATCTGTGAAGCAAAAAATTCAAGATAAGGAAGGAATCCCTCCGGA 83381 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || || | || |||| ||| || ||||| || || || | | || ||| | ||||| Sbjct 83380 TCAGCAAAGACTTATTTTCGCAGGAAAACAACTCGAAGATGGTAGAACTCTCCAGGACTA 83321 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||||||||||| ||||| || ||||| | ||| || Sbjct 83320 CAACATCCAAAAAGAAGCCACATTGCATCTTGTGTTG 83284 >seq15 Length=259596 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || || || | || || || ||||||||| | || ||||| | Sbjct 136239 AATGCAAATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTCGAAAATGC 136180 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | || | | || ||||||| | || || || |||||||| | || || Sbjct 136179 AGATACCATCGAATCTGTGAAGCAAAAAATTCAGGATAAGGAAGGAATTCCTCCAGATCA 136120 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | || || | ||| || ||||| || || || | || || || | || || || Sbjct 136119 ACAAAGACTTATCTTCGCTGGAAAACAACTCGAAGATGGTCGTACACTTCAAGATTATAA 136060 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || ||||||||||| || || || |||||||| ||| Sbjct 136059 TATTCAAAAGGAAGCTACACTCCACTTGGTGCTTCGT 136023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500159701724800