Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq58 116 4e-21 seq1672 82.4 9e-11 seq185 82.4 9e-11 seq108 82.4 9e-11 >seq58 Length=166100 Score = 116 bits (128), Expect = 4e-21 Identities = 380/579 (66%), Gaps = 30/579 (5%) Strand=Plus/Minus Query 168959 GAAATACTCCCGAGCTTCAGCACTCGTGCTGGTACCCAGACCCTTGTAGTACTTGATTTT 169018 ||| ||||| ||||||||| ||| ||||||||||||||| ||||||||||| || Sbjct 91663 GAAGTACTCTTTCGCTTCAGCAGGTGTGGAGGTACCCAGACCCTTATAGTACTTGATCTT 91604 Query 169019 CCAACC-----TGCTTGTCCGCTACCATACCAGGTACGGAAA-GCCGAATCTGTATAGAA 169072 ||| || ||| ||| || || ||| | | ||| | || || || || || Sbjct 91603 CCATCCGCGGGTGCCGTTCCTCTGCCT--CCAT-TCCTCAAACGATGATTCAGTGTAAAA 91547 Query 169073 TGATTT---TGATTGACCACCCTTGGAAGCCTTGATGATTGGTGTCACCATAGAAACCAC 169129 ||| || || || || || | || |||||||||||||| | ||| | Sbjct 91546 TGACTTCACTGTTTTTCCT---TTCGTTGCTTTGATGATTGGTGTGAT----GAACTCCT 91494 Query 169130 G---AAACCCA----ACTTGAGAAGACTGGGCCAGAAGTAGTGGATCATATTTAGGATGA 169182 | ||| || | || | |||| ||||| | | | || ||| || | || | Sbjct 91493 GCATAAAGCCGTTGTATTTCAAAAGAGATGGCCACATCTTTTCGAACATGTTGATGAGAA 91434 Query 169183 GACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACCATAGC 169242 | |||||||||||||| ||||||| ||| ||| | ||||||||| ||| | ||||| | Sbjct 91433 GTCCCTTGATGTGAGACCCATCATGATCCTGATCAGCCATAATCATCAGATGCCCATATC 91374 Query 169243 GAAGTTCAGAAACATCTTGGTAGTCTTTTCCTTGTTGAAGACCCAAGATCTTCTTGAGAT 169302 || || || ||| | || | ||| ||||| ||||| |||| ||| ||||| | || Sbjct 91373 TCAGATCCTTAATATCATCATAATGTTTGCCTTGCTGAAGCCCCATGATTTTCTTTATAT 91314 Query 169303 CGTTGAACTCTTGGTTTGATGTGAGCTGTGCCACTGAAGCGTCGCGGACATTCTTACAC- 169361 | || || ||| | ||||||| ||| || || | ||||| | ||| Sbjct 91313 TTGTAAATTCAGCATTTTGCGACAGCTGTGATGCTGTTGCATCTCTCACATTGAT-CACT 91255 Query 169362 TTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGACC 169421 || || | || ||||| || ||||| | || | |||| || || || || || Sbjct 91254 TTACCTCTCAGTGGAAACACTCCATAATTGTCTCTACCAATCACTCCAAGCCCTGCAACA 91195 Query 169422 GCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTTTC-CAGATTGCGC 169480 ||||| | ||| || ||||| || || || | ||| || || || || | | ||| || Sbjct 91194 GCAAGCGATTTGGCAGAATCTCCTTCGGTCAGAATAAGTGTGCAGTTACGCGCATTACG- 91136 Query 169481 CGTACCCGCCTTGTTTGCGTCGTCCAACTTGGGAATACC 169519 ||||| ||| |||| || || || ||||| ||||| || Sbjct 91135 AGTACCAGCCATGTTGGCATCTTCTAACTTTGGAATTCC 91097 Score = 84.2 bits (92), Expect = 3e-11 Identities = 288/435 (66%), Gaps = 28/435 (6%) Strand=Plus/Minus Query 168289 ATCCCGTACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTAAA 168348 |||| || || ||||| || | ||||| || || ||| || ||| | || | || Sbjct 92324 ATCCAGTTCCAATACCGTCTGCACCATTGACAAGGCACATCGGAATGATGGGAACATACC 92265 Query 168349 AGTCTGGTTCAATTGAGCGCCCATCATCATCCAAGTAGTTGAGGA-----TCGGGT-CAT 168402 | || || || |||| ||||||||||||| || || || | ||| | | | Sbjct 92264 ACTCAGGCTCGATTGGCATACCATCATCATCCAGATACTTCAGCAATCTGTCGTCTTCTT 92205 Query 168403 CCCGAG-GATCAAAGATCTTGCGAGCCTCTTTGGTAAGTTTTGTGAAAATGTACCTCGTC 168461 | ||| ||||| |||||| ||| || || |||||||||||||| | | | Sbjct 92204 CTCGAAAGATCAG---TCTTGCAAGCGGATTC----AGCTTTGTGAAAATGTAACGAG-C 92153 Query 168462 TGA-GAAGCATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAG 168520 || | |||||| || ||||| ||||| ||||| ||||||||| | || ||||||| Sbjct 92152 AGACGCAGCATCTTTGCCACCTGACAGACGTGTACCGAATTGACCAGAAGGAACAAGAAG 92093 Query 168521 GTTAATGTTGTTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCG-TGTCCGCTAAG- 168578 || |||||||| || | | || ||| | |||||||||| || | | ||| Sbjct 92092 ATTGATGTTGTTGCTTCCGACGAAATCACGTGCAAGGTTAACAATCGTTGACTG--AAGT 92035 Query 168579 GATACTTCACCATGGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACC 168638 || |||||| || ||||| | || || || || ||| | | || || || || Sbjct 92034 GACTGTTCACCGTGATGGTATGATGATACTTCTGCAACGTATCCAGAAAGCTGGGCAACT 91975 Query 168639 TTCATTTCATCCTTGAGATT---CTTATGGAAGCAAGCATACATCA-CTTTCCTCTGTGA 168694 || ||||||| ||| ||||| |||| ||||| ||||| | | ||||| | ||| Sbjct 91974 TTAATTTCATTCTTAAGATTACGCTTA---AAGCAGGCATATAAAATCTTTCGT-TGTCC 91919 Query 168695 AGGCTTGAGACCATC 168709 |||||| | ||||| Sbjct 91918 AGGCTTAAATCCATC 91904 >seq1672 Length=5429 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 136162 AAGCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAA 136221 |||||||||||||||| |||| | ||| | ||||| ||||||| || |||||||| || Sbjct 5415 AAGCTCTTATAGTGTAATGGTTAGCACCTAGGACTCTGAATCCTGTAATCCTGGTTCGAA 5356 Query 136222 TCCAGGTAGGAGC 136234 ||||||||||||| Sbjct 5355 TCCAGGTAGGAGC 5343 >seq185 Length=101656 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 136162 AAGCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAA 136221 |||||||||||||||| |||| | ||| | ||||| ||||||| || |||||||| || Sbjct 32233 AAGCTCTTATAGTGTAATGGTTAGCACCTAGGACTCTGAATCCTGTAATCCTGGTTCGAA 32174 Query 136222 TCCAGGTAGGAGC 136234 ||||||||||||| Sbjct 32173 TCCAGGTAGGAGC 32161 >seq108 Length=125192 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 136162 AAGCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAA 136221 |||||| ||||||||| |||| | ||| | ||||||||||||| || |||||||| || Sbjct 36327 AAGCTCCTATAGTGTAATGGTTAGCACCTAGGACTTTGAATCCTGTAATCCTGGTTCGAA 36268 Query 136222 TCCAGGTAGGAGC 136234 ||||||||||||| Sbjct 36267 TCCAGGTAGGAGC 36255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589965349877800