Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq216 178 3e-39 seq528 163 6e-35 seq15 163 6e-35 >seq216 Length=89640 Score = 178 bits (196), Expect = 3e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| || | |||| |||||||| || ||||| || |||||||| Sbjct 83279 AGTCTCAACACAAGATGCAATGTGGCTTCTTTTTGGATGTTGTAGTCCTGGAGAGTTCTA 83338 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||||||||| || || |||||||| ||||||| ||| || || ||||| || ||||| Sbjct 83339 CCATCTTCGAGTTGTTTTCCTGCGAAAATAAGTCTTTGCTGATCCGGAGGGATTCCTTCC 83398 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || ||||||||||||||||| || ||||| ||||| | |||| ||||| |||||| Sbjct 83399 TTATCTTGAATTTTTTGCTTCACAGATTCAATTGTGTCTGCGTTTTCGACTTCGAGGGTA 83458 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || ||||||||||| || || || || | |||||| Sbjct 83459 ATTGTTTTTCCTGTCAATGTCTTCACAAAAATTTGCAT 83496 Score = 156 bits (172), Expect = 9e-33 Identities = 170/223 (76%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCG-GCAAGAG 194977 ||| | ||||| ||||| || || || | ||| ||||| |||||||| || |||| | Sbjct 83047 TCTCAATCTCAGCACAAGATGGAGTGTTGCCTCCTTTTGGATATTGTAGTCTTGCAAT-G 83105 Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 | | || ||||| | ||||| || ||||||||||||| |||||||| |||||||| | Sbjct 83106 TGCGACCGTCTTCCAATTGCTTTCCAGCGAAGATAAGTCTCTGTTGGTCCGGAGGAATAC 83165 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAA 195097 |||| ||||||||||| || ||||| || |||||| ||||| | |||| || |||| Sbjct 83166 CTTCCTTGTCTTGAATCTTCTGCTTAACTGACTCAATTGTGTCAGCGTTTTCAACCTCAA 83225 Query 195098 GGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| | || ||||| ||||||||||| || || | ||||| Sbjct 83226 GGGTGATGGTTTTTCCAGTCAAAGTTTTCACAAAGATCTGCAT 83268 >seq528 Length=44320 Score = 163 bits (180), Expect = 6e-35 Identities = 159/205 (78%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || | || ||||||||||| ||||| ||| || | ||||||||||| || Sbjct 9253 GTGGAGTGTAGCTTCCTTTTGAATATTATAATCTTGAAGTGTGCGACCATCTTCGAGTTG 9312 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || ||||||||||||| |||||| ||||||||||| ||||| || || ||||| || Sbjct 9313 TTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTATCCTGAATCTT 9372 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || ||||| ||||| | | |||| || |||||||| | |||||||| || Sbjct 9373 TTGCTTCACAGATTCAATAGTGTCTGCATTTTCGACCTCAAGGGTGATGGTCTTTCCAGT 9432 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 ||| || || || || | ||||||| Sbjct 9433 CAATGTCTTCACAAAGATTTGCATT 9457 >seq15 Length=259596 Score = 163 bits (180), Expect = 6e-35 Identities = 159/205 (78%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || | || ||||||||||| ||||| ||| || | ||||||||||| || Sbjct 136035 GTGGAGTGTAGCTTCCTTTTGAATATTATAATCTTGAAGTGTACGACCATCTTCGAGTTG 136094 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || ||||||||||||| |||||| ||||||||||| ||||| || || |||||||| Sbjct 136095 TTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTATCCTGAATTTT 136154 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || || ||||| || | | |||| || |||||||| | |||||||| || Sbjct 136155 TTGCTTCACAGATTCGATGGTATCTGCATTTTCGACCTCAAGGGTGATGGTCTTTCCAGT 136214 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 ||| || || || || | ||||||| Sbjct 136215 CAATGTCTTCACAAAGATTTGCATT 136239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109451819086865