Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq216 102 5e-17 seq528 96.9 2e-15 seq15 93.3 3e-14 >seq216 Length=89640 Score = 102 bits (112), Expect = 5e-17 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGT-GCTTTCTTTCTGAATGTTATAGTCC 34811 ||||||| ||||| |||| || | || | ||| || | |||| || || || ||||| Sbjct 83040 TTCCTCCTCTCAATCTCAGCACAAGATGGAGTGTTGCCTCCTTT-TGGATATTGTAGTCT 83098 Query 34812 -GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTG 34870 | || | | || | || |||| || ||||| || || || |||| || ||||| | Sbjct 83099 TGCAATG-TGCGACCGTCTTCCAATTGCTTTCCAGCGAAGATAAGTCTCTGTTGGTCCGG 83157 Query 34871 CGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTC 34930 || | || |||||||| ||||||||| || || || | || | ||| || || Sbjct 83158 AGGAATACCTTCCTTGTCTTGAATCTTCTGCTTAACTGACTCAATTGTGTCAGCGTTTTC 83217 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || | ||| ||||||||||| || | ||| |||||||||||||||||| Sbjct 83218 AACCTCAAGGGTGATGGTTTTTCCAGTCAAAGTTTTCACAAAGATCTGCATA 83269 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 ||||| || | || | |||| |||||| || ||||| |||||| || ||| || Sbjct 83282 CTCAACACAAGATGCAATGTGGCTTCTTTTTGGATGTTGTAGTCCTGGAGAGTTCTACCA 83341 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || || || |||||||| || || || |||| |||||| || | || | || ||||| Sbjct 83342 TCTTCGAGTTGTTTTCCTGCGAAAATAAGTCTTTGCTGATCCGGAGGGATTCCTTCCTTA 83401 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || ||| || || || || ||| | || | || || || || |||| ||| || Sbjct 83402 TCTTGAATTTTTTGCTTCACAGATTCAATTGTGTCTGCGTTTTCGACTTCGAGGGTAATT 83461 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||||||| || | ||||||||||| || ||||| || Sbjct 83462 GTTTTTCCTGTCAATGTCTTCACAAAAATTTGCATGTT 83499 >seq528 Length=44320 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGT-GCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||||| | ||| |||| |||| ||||| ||||| || ||| | || |||| || Sbjct 9248 ACCAAGTGGAGTGTAGCTTCCTTT-TGAATATTATAATCTTGAAGTGTGCGACCATCTTC 9306 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || |||||||| || || || |||| ||| || ||| | || | || ||||| || Sbjct 9307 GAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTATCCTG 9366 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 |||||| || || || ||| | || | || | || || || | ||| ||||| || Sbjct 9367 AATCTTTTGCTTCACAGATTCAATAGTGTCTGCATTTTCGACCTCAAGGGTGATGGTCTT 9426 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || | |||||||||||||| ||||| Sbjct 9427 TCCAGTCAATGTCTTCACAAAGATTTGCAT 9456 >seq15 Length=259596 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGT-GCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||||| | ||| |||| |||| ||||| ||||| || ||| | || |||| || Sbjct 136030 ACCAAGTGGAGTGTAGCTTCCTTT-TGAATATTATAATCTTGAAGTGTACGACCATCTTC 136088 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || |||||||| || || || |||| ||| || ||| | || | || ||||| || Sbjct 136089 GAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTATCCTG 136148 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| || || || || ||| | || | || | || || || | ||| ||||| || Sbjct 136149 AATTTTTTGCTTCACAGATTCGATGGTATCTGCATTTTCGACCTCAAGGGTGATGGTCTT 136208 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || | |||||||||||||| ||||| Sbjct 136209 TCCAGTCAATGTCTTCACAAAGATTTGCAT 136238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324625311191160