Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq72 120 4e-22 seq126 93.3 5e-14 >seq72 Length=150145 Score = 120 bits (132), Expect = 4e-22 Identities = 182/256 (71%), Gaps = 6/256 (2%) Strand=Plus/Minus Query 78237 ATTGGAATTGATGAAGGTCAATTTTTTAATGATATAGTGGAATTTTCTGAAAATATGGCA 78296 || ||||| |||||||| ||||||| | ||| |||||||||||| ||||| || Sbjct 53678 ATAGGAATAGATGAAGGACAATTTTATCCAGATTTAGTGGAATTTTGTGAAATGCAAGCG 53619 Query 78297 AATAAAGGAAAAATTGTTATTGTTTCGGCATTAGATGCTACATATCAAAGAAAAACATTT 78356 ||| ||||||||||| |||||| | || | |||| |||| |||||||||| |||| Sbjct 53618 AATTCTGGAAAAATTGTAATTGTTGCAGCTCTTGATGGAACATTTCAAAGAAAACGATTT 53559 Query 78357 GGTAATATTCTAAATTTAATTCCATTATCTGAAAAGGTAATAAAATTAAATGCTATATGT 78416 | || || | || ||||||| |||| ||| || |||| | ||||| | ||| Sbjct 53558 AATGATGTTGTTGATCTAATTCCGTTATGCGAATCAGTTGAAAAACTCAATGCGGTCTGT 53499 Query 78417 AAAATATGTTTTAATGATGCTGCATTTACAAAAAGA-TTAT--GTGACGATACTAAAATT 78473 | | | || | | ||||||||||||||| ||| || | ||||||| | |||| Sbjct 53498 ACAGTTTGCGGAAGAGCTGCTGCATTTACAAAGAGACTTGTTGATGACGATTC---AATT 53442 Query 78474 GAACTAATTGGTGGAG 78489 ||||| |||| |||| Sbjct 53441 GAACTTGTTGGAGGAG 53426 >seq126 Length=114318 Score = 93.3 bits (102), Expect = 5e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 78231 GATGTTATTGGAATTGATGAAGGTCAATTTTTTAATGATATAGTGGAATTTTCTGAAAAT 78290 ||||| |||||| |||||||||| ||||||| | |||| || ||||||||| |||| | Sbjct 63366 GATGTAATTGGAGTTGATGAAGGACAATTTTATCCTGATTTATTGGAATTTTGTGAAGCT 63307 Query 78291 ATGGCAAATAAAGGAAAAATTGTTATTGTTTCGGCATTAGATGCTACATATCAAAGAAAA 78350 |||||| | ||||||||||||||||| || || | || | || | ||||| || Sbjct 63306 CAAGCAAATGATGGAAAAATTGTTATTGTATCCGCTCTTGACGGAACTTTCCAAAGGAAG 63247 Query 78351 ACATTT 78356 | |||| Sbjct 63246 AGATTT 63241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592301288703800