Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq216 120 2e-22 seq15 98.7 8e-16 >seq216 Length=89640 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCG- 101299 |||||||||| || | | || | ||| || || | || ||||| |||||||| || Sbjct 83040 TTCCTCCTCTCAATCTCAGCACAAGATGGAGTGTTGCCTCCTTTTGGATATTGTAGTCTT 83099 Query 101300 GCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGC 101359 || || || | | || ||||||||||| || || || || | | |||||| || || Sbjct 83100 GCAAT-GTGCGACCGTCTTCCAATTGCTTTCCAGCGAAGATAAGTCTCTGTTGGTCCGGA 83158 Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 ||||| ||||| || |||||||| || || || || || | ||||||| |||| Sbjct 83159 GGAATACCTTCCTTGTCTTGAATCTTCTGCTTAACTGACTCAATTGTGTCAGCGTTTTCA 83218 Query 101420 ACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| |||| ||||| || || |||||||| ||||| |||||||| Sbjct 83219 ACCTCAAGGGTGATGGTTTTTCCAGTCAAAGTTTTCACAAAGATCTGCAT 83268 Score = 114 bits (126), Expect = 1e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 101278 TTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAA 101337 ||||||||| || ||||| || || |||||| |||| || | ||| || ||||| || Sbjct 83305 TTCTTTTTGGATGTTGTAGTCCTGGAGAGTTCTACCATCTTCGAGTTGTTTTCCTGCGAA 83364 Query 101338 TATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAAT 101397 || | | || ||||| || || || ||||| ||||||||||||||||| || ||| Sbjct 83365 AATAAGTCTTTGCTGATCCGGAGGGATTCCTTCCTTATCTTGAATTTTTTGCTTCACAGA 83424 Query 101398 TTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTAC 101457 ||| | ||||| | |||| ||||| || || | ||||| || || || || || || Sbjct 83425 TTCAATTGTGTCTGCGTTTTCGACTTCGAGGGTAATTGTTTTTCCTGTCAATGTCTTCAC 83484 Query 101458 AAATATCTGCATGGTT 101473 ||| || |||||| || Sbjct 83485 AAAAATTTGCATGTTT 83500 >seq15 Length=259596 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || |||| ||| ||||| ||||| ||||| | || | |||| || Sbjct 136030 ACCAAGTGGAGTGTAGCTTCCTTTTGAATATTATAATCTTGAAGTGTACGACCATCTTCG 136089 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||| || || || || || | | |||||||| || ||||| ||||| ||||| ||| Sbjct 136090 AGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTATCCTGA 136149 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 |||||||| || ||| ||| | || || | |||| || ||||| |||| || || Sbjct 136150 ATTTTTTGCTTCACAGATTCGATGGTATCTGCATTTTCGACCTCAAGGGTGATGGTCTTT 136209 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || || ||||| || ||||| Sbjct 136210 CCAGTCAATGTCTTCACAAAGATTTGCAT 136238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396268281897915