Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq216 100 2e-16 seq528 84.2 2e-11 >seq216 Length=89640 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 || ||| | ||| || || ||| ||||| |||||||| || | | ||| |||| Sbjct 83056 CAGCACAAGATGGAGTGTTGCCTCCTTTTGGATATTGTAGTCTTGCAATGTGCGACCGTC 83115 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 ||||| ||||| || || || || |||| |||||| |||| |||| || |||||||| Sbjct 83116 TTCCAATTGCTTTCCAGCGAAGATAAGTCTCTGTTGGTCCGGAGGAATACCTTCCTTGTC 83175 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 |||||| || || || || | | | || | || ||||| | || || || Sbjct 83176 TTGAATCTTCTGCTTAACTGACTCAATTGTGTCAGCGTTTTCAACCTCAAGGGTGATGGT 83235 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||| ||||||||||| ||||| |||||||| Sbjct 83236 TTTTCCAGTCAAAGTTTTCACAAAGATCTGCAT 83268 >seq528 Length=44320 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGT-GCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 ||||| || || || ||| || ||||||||||| ||||| || | ||| | || || Sbjct 9248 ACCAAGTGGAGTGTAGCT-TCCTTTTGAATATTATAATCTTGAAGTGTGCGACCATCTTC 9306 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 | || || || || || || |||| |||||||| | |||| || ||||| || Sbjct 9307 GAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTATCCTG 9366 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 ||||||||| || ||||| | | || |||| || ||||| | || || || || Sbjct 9367 AATCTTTTGCTTCACAGATTCAATAGTGTCTGCATTTTCGACCTCAAGGGTGATGGTCTT 9426 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| ||||| || || ||||| || ||||| Sbjct 9427 TCCAGTCAATGTCTTCACAAAGATTTGCAT 9456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380927873591685