Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq15 95.1 1e-14 seq216 93.3 4e-14 seq528 91.5 1e-13 >seq15 Length=259596 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || ||||| || || || ||||| ||| || ||| | | Sbjct 136239 AATGCAAATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTCGAAAATGC 136180 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | | | ||||||||||| || || || ||| | || |||||| Sbjct 136179 AGATACCATCGAATCTGTGAAGCAAAAAATTCAGGATAAGGAAGGAATTCCTCCAGATCA 136120 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| ||||||||||| || || |||||| | |||||| | || | |||||||| Sbjct 136119 ACAAAGACTTATCTTCGCTGGAAAACAACTCGAAGATGGTCGTACACTTCAAGATTATAA 136060 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||| ||| |||| || ||| |||| Sbjct 136059 TATTCAAAAGGAAGCTACACTCCACTTGGT 136030 >seq216 Length=89640 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 ||| |||||||| ||||| || ||||| || || ||||| |||||| |||| ||| Sbjct 83500 AAACATGCAAATTTTTGTGAAGACATTGACAGGAAAAACAATTACCCTCGAAGTCGAAAA 83441 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 |||| || | | | | ||||||||||| || || || ||| | || || Sbjct 83440 CGCAGACACAATTGAATCTGTGAAGCAAAAAATTCAAGATAAGGAAGGAATCCCTCCGGA 83381 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 ||| || |||||||| || || || |||||| | |||||| || |||| | || || Sbjct 83380 TCAGCAAAGACTTATTTTCGCAGGAAAACAACTCGAAGATGGTAGAACTCTCCAGGACTA 83321 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| ||||||||| | || |||| | || || ||| | || || || || Sbjct 83320 CAACATCCAAAAAGAAGCCACATTGCATCTTGTGTTGAGACTTCGTGGTGGTAT 83267 >seq528 Length=44320 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || ||||| || || || ||||| ||| || ||| | | Sbjct 9457 AATGCAAATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTCGAAAATGC 9398 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | | | |||||||| || || || || ||| | || |||||| Sbjct 9397 AGACACTATTGAATCTGTGAAGCAAAAGATTCAGGATAAGGAAGGAATTCCTCCAGATCA 9338 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| ||||||||||| || || |||||| | |||||| | || | |||||||| Sbjct 9337 ACAAAGACTTATCTTCGCTGGAAAACAACTCGAAGATGGTCGCACACTTCAAGATTATAA 9278 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||| ||| |||| || ||| |||| Sbjct 9277 TATTCAAAAGGAAGCTACACTCCACTTGGT 9248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425393938219005