Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq58 114 2e-20 >seq58 Length=166100 Score = 114 bits (126), Expect = 2e-20 Identities = 378/579 (65%), Gaps = 28/579 (5%) Strand=Plus/Plus Query 13552 CGGTATTCCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAATCTG-GAAAGTGTA 13610 ||| ||||| ||||| || || || |||| ||| ||||| | ||| | | || || | Sbjct 91096 CGGAATTCCAAAGTTAGAAGATGCCAACATGGCTGGTACT-CGTAATGCGCGTAACTGCA 91154 Query 13611 CTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTCG 13670 | || ||| | || || || ||||| || ||| | || || ||||| || || || Sbjct 91155 CACTTATTCTGACCGAAGGAGATTCTGCCAAATCGCTTGCTGTTGCAGGGCTTGGAGTGA 91214 Query 13671 TTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAATGTAAGAATGTTCGGGACG 13730 ||||| | || | || || ||||| ||||| | |||||| | ||||| | || | Sbjct 91215 TTGGTAGAGACAATTATGGAGTGTTTCCACTGAGAGGTAAAGTGATCAATGTGAGAGATG 91274 Query 13731 CTTCGGTGGCACAGCTCACATCAAACCAGGAGTTCAACGATCTCAAGAAGATCCTTGGTC 13790 | | | ||||||| | ||| || || | || | ||||| ||| | || | Sbjct 91275 CAACAGCATCACAGCTGTCGCAAAATGCTGAATTTACAAATATAAAGAAAATCATGGGGC 91334 Query 13791 TTCAACAAGGAAAAGACTACCAAGATGTTTCTGAACTTCGCTATGGTCGTCTTATGATTA 13850 |||| ||||| ||| | || | ||| || || || | ||||| | ||| ||||||| Sbjct 91335 TTCAGCAAGGCAAACATTATGATGATATTAAGGATCTGAGATATGGGCATCTGATGATTA 91394 Query 13851 TGACAGATGCCGATAATGATGGTTCTCACATCAAGGGTCTCATCCTAAATATGATCCACT 13910 || | ||| ||| ||||||| |||||||||||||| || || | || ||| || | Sbjct 91395 TGGCTGATCAGGATCATGATGGGTCTCACATCAAGGGACTTCTCATCAACATGTTCGAAA 91454 Query 13911 ACTTCTGGCCCAGTCTTCTCAAGT----TGGGTTT---CGTGGTTTCTATGGTGACACCA 13963 | | ||||| |||| | || | || ||| | | ||| | |||||| Sbjct 91455 AGATGTGGCCATCTCTTTTGAAATACAACGGCTTTATGCAGGAGTTC----ATCACACCA 91510 Query 13964 ATCATCAAGGCTTCCAAGGGTGGTCAATCA---AAATCATTCTATACAGATTCGGC-TTT 14019 |||||||| || | || || || || || ||||| || || || || | ||| Sbjct 91511 ATCATCAAAGCAACGAA---AGGAAAAACAGTGAAGTCATTTTACACTGAATCATCGTTT 91567 Query 14020 CCGTACCTGGTATGGTAGCGGACAAGCA-----GGTTGGAAAATCAAGTACTACAAGGGT 14074 | | ||| || || ||| ||| || ||||| ||||||||||| |||||| Sbjct 91568 GAGGA-ATGG--AGGCAGAGGAACGGCACCCGCGGATGGAAGATCAAGTACTATAAGGGT 91624 Query 14075 CTGGGTACCAGCACGAGTGCTGAAGCTCGGGAGTATTTC 14113 ||||||||| ||| ||||||||| ||||| ||| Sbjct 91625 CTGGGTACCTCCACACCTGCTGAAGCGAAAGAGTACTTC 91663 Score = 84.2 bits (92), Expect = 3e-11 Identities = 192/279 (69%), Gaps = 14/279 (5%) Strand=Plus/Plus Query 14363 GATGGTCTCAAGCCTTCACAGAGGAAAG-TGATGTATGCTTGCTTCCATAAG---AATCT 14418 ||||| | |||||| ||| | ||||| | | ||||| ||||| |||| ||||| Sbjct 91904 GATGGATTTAAGCCTGGACA-ACGAAAGATTTTATATGCCTGCTT---TAAGCGTAATCT 91959 Query 14419 CAAGGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCA 14478 ||| ||||||| || || || || || | | ||| || || || || | ||||| Sbjct 91960 TAAGAATGAAATTAAAGTTGCCCAGCTTTCTGGATACGTTGCAGAAGTATCATCATACCA 92019 Query 14479 CCATGGTGAAGTATC-CTTAGCGGACA-CGATTGTTAAGTTGGCAAACGACTACACGGGT 14536 || |||||| || ||| | | || |||||||||| | ||| || | | || Sbjct 92020 TCACGGTGAACAGTCACTT--CAGTCAACGATTGTTAACCTTGCACGTGATTTCGTCGGA 92077 Query 14537 TCAAACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGT 14596 |||||||| || ||||||| || | ||||||||| ||||| ||||| ||||| Sbjct 92078 AGCAACAACATCAATCTTCTTGTTCCTTCTGGTCAATTCGGTACACGTCTGTCAGGTGGC 92137 Query 14597 AAGGATGCTTC-TCAGACGAGGTACATTTTCACAAAACT 14634 || |||||| | || | | | |||||||||||||| || Sbjct 92138 AAAGATGCTGCGTCTG-CTCGTTACATTTTCACAAAGCT 92175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596553977333600