Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq15 127 4e-24 seq528 122 2e-22 >seq15 Length=259596 Score = 127 bits (140), Expect = 4e-24 Identities = 178/245 (73%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 192296 TTAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAG 192354 || ||| ||||| |||||| | |||||| | || || || | ||||| || ||| || Sbjct 135998 TTGGTTCAATAACACCACCACGAAGACGAAGCACCAAGTGGAGTGTAGCTTCCTTTTGA- 136056 Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||||||||| | ||| || |||| || | |||||| ||||| ||||| | ||| Sbjct 136057 ATATTATAATCTTGAAGTGTACGACCATCTTCGAGTTGTTTTCCAGCGAAGATAAGTCTT 136116 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTAC--ATTAGTTATAG 192472 |||||||| || || |||||||| ||||| || ||||| | || || ||| | || | Sbjct 136117 TGTTGATCTGGAGGAATTCCTTCCTTATCCTGAATTTTTTGCTTCACAGATTCG--ATGG 136174 Query 192473 AATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCT 192532 ||||| ||| || || || || ||||| || ||||| ||||| || | ||| || | Sbjct 136175 TATCTGCATTTTCGACCTCAAGGGTGATGGTCTTTCCAGTCAATGTCTTCACAAAGATTT 136234 Query 192533 GCATT 192537 ||||| Sbjct 136235 GCATT 136239 >seq528 Length=44320 Score = 122 bits (134), Expect = 2e-22 Identities = 176/246 (72%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 192296 TTAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAG 192354 || ||| ||||| |||||| | |||||| | || || || | ||||| || ||| || Sbjct 9216 TTGGTTCAATAACACCACCACGAAGACGAAGGACCAAGTGGAGTGTAGCTTCCTTTTGA- 9274 Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||||||||| | ||| || |||| || | |||||| ||||| ||||| | ||| Sbjct 9275 ATATTATAATCTTGAAGTGTGCGACCATCTTCGAGTTGTTTTCCAGCGAAGATAAGTCTT 9334 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 |||||||| || || |||||||| ||||| || || || | || ||| |||| Sbjct 9335 TGTTGATCTGGAGGAATTCCTTCCTTATCCTGAATCTTTTGCTTCACAGATTCAATAGTG 9394 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 |||| ||| || || || || ||||| || ||||| ||||| || | ||| || ||| Sbjct 9395 TCTGCATTTTCGACCTCAAGGGTGATGGTCTTTCCAGTCAATGTCTTCACAAAGATTTGC 9454 Query 192535 ATTTTA 192540 ||| || Sbjct 9455 ATTATA 9460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984453574403250