Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq15 102 1e-16 seq528 95.1 2e-14 seq216 86.0 1e-11 >seq15 Length=259596 Score = 102 bits (112), Expect = 1e-16 Identities = 170/244 (70%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 171829 TTAGTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAA 171888 || ||| |||| |||||| | ||| || | || || || | ||||| || || || Sbjct 135998 TTGGTTCAATAACACCACCACGAAGACGAAGCACCAAGTGGAGTGTAGCTTCCTTTTGAA 136057 Query 171889 TATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCT 171948 ||||||||||| | | || | || || | |||||| ||||| || || | ||| | Sbjct 136058 TATTATAATCTTGAAGTGTACGACCATCTTCGAGTTGTTTTCCAGCGAAGATAAGTCTTT 136117 Query 171949 GTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTAC--ATTAGTTATAGT 172006 |||| || || || |||||||| ||||| || ||||| | || || ||| | || || Sbjct 136118 GTTGATCTGGAGGAATTCCTTCCTTATCCTGAATTTTTTGCTTCACAGATTCG--ATGGT 136175 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||||| ||| || || || || ||||| || ||||| ||||| || | || || || Sbjct 136176 ATCTGCATTTTCGACCTCAAGGGTGATGGTCTTTCCAGTCAATGTCTTCACAAAGATTTG 136235 Query 172067 CATT 172070 |||| Sbjct 136236 CATT 136239 >seq528 Length=44320 Score = 95.1 bits (104), Expect = 2e-14 Identities = 168/245 (69%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 171829 TTAGTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAA 171888 || ||| |||| |||||| | ||| || | || || || | ||||| || || || Sbjct 9216 TTGGTTCAATAACACCACCACGAAGACGAAGGACCAAGTGGAGTGTAGCTTCCTTTTGAA 9275 Query 171889 TATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCT 171948 ||||||||||| | | || | || || | |||||| ||||| || || | ||| | Sbjct 9276 TATTATAATCTTGAAGTGTGCGACCATCTTCGAGTTGTTTTCCAGCGAAGATAAGTCTTT 9335 Query 171949 GTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTAT 172008 |||| || || || |||||||| ||||| || || || | || ||| ||||| | Sbjct 9336 GTTGATCTGGAGGAATTCCTTCCTTATCCTGAATCTTTTGCTTCACAGATTCAATAGTGT 9395 Query 172009 CTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCA 172068 ||| ||| || || || || ||||| || ||||| ||||| || | || || |||| Sbjct 9396 CTGCATTTTCGACCTCAAGGGTGATGGTCTTTCCAGTCAATGTCTTCACAAAGATTTGCA 9455 Query 172069 TTTTA 172073 || || Sbjct 9456 TTATA 9460 >seq216 Length=89640 Score = 86.0 bits (94), Expect = 1e-11 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| | || | || | ||| | || ||||| || ||||| || ||| Sbjct 83039 ATTCCTCCTCTCAATCTCAGCACAAGATGGAGTGTTGCCTCCTTTTGGATATTGTAGTCT 83098 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || |||| |||||||| || ||||| || || | |||||||||||| || Sbjct 83099 TGCAATGTGCGACCGTCTTCCAATTGCTTTCCAGCGAAGATAAGTCTCTGTTGGTCCGGA 83158 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGT-TATAGTATCTGACGATTC 172018 || || ||||| || ||||| || || | || || | | | || || || | ||| Sbjct 83159 GGAATACCTTCCTTGTCTTGAATCTTCTGCTTAAC-TGACTCAATTGTGTCAGCGTTTTC 83217 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || |||||||| ||||| || ||||| | || |||||||| Sbjct 83218 AACCTCAAGGGTGATGGTTTTTCCAGTCAAAGTTTTCACAAAGATCTGCAT 83268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905112296751000