Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq240 100 8e-16 >seq240 Length=83841 Score = 100 bits (110), Expect = 8e-16 Identities = 210/310 (68%), Gaps = 6/310 (2%) Strand=Plus/Minus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 |||||||| ||||| | ||| |||||||| |||||||| | ||| || |||||| Sbjct 56081 TCTTCCATCGCTTTGATCAGACGCCGCTGAATGTAACCAGTCTCACTTGTCTTGACAGCT 56022 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691 ||||| || | || | | || ||||| || |||||| | | ||| | |||| ||| Sbjct 56021 GTATCGATAACTCCTTCTCTGCCTCCCATTGCGTGGAAGTAGAACTCCTGCGGTGTCAGC 55962 Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGG-GC--GAATCGTCGAACTTG 302748 || | | | ||| |||| || || || || | || | |||||| || Sbjct 55961 CCTTTCAAATACGAGTTCTCCACAAATCCTTTGCTTTCTGTGCCTGGATCGTC---CTGT 55905 Query 302749 GTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTC 302808 || ||||| || || ||||| ||| | |||||| |||||| ||||| || |||||| Sbjct 55904 GTGAAGTGAGGGAGCGTCCTCTTCCTGAAACCGTATCTGATACGTTTTCCTTCCACGTTC 55845 Query 302809 TGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAGCA 302868 |||||||||| |||| ||||| ||||| || | ||||| || || ||||| Sbjct 55844 TGCTGTCCCACACACGCTGCAATCTGTGAAATGTTGAGCGTGCTGCCTTTCGAACCAGCT 55785 Query 302869 TTTACCATAA 302878 ||||||| Sbjct 55784 GCCACCATAA 55775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471778093196015