Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq528 118 1e-21 seq15 114 1e-20 seq216 100 3e-16 >seq528 Length=44320 Score = 118 bits (130), Expect = 1e-21 Identities = 175/245 (71%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || | || || || || || || || || || ||| | Sbjct 9456 ATGCAAATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTCGAAAATGCA 9397 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | ||| | || || |||||||| || || || |||||||| ||||| |||||| Sbjct 9396 GACACTATTGAATCTGTGAAGCAAAAGATTCAGGATAAGGAAGGAATTCCTCCAGATCAA 9337 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCA-GATTAT 24880 ||| | | ||||| || || ||||| || || ||| ||| ||| ||| |||||| Sbjct 9336 CAAAGACTTATCTTCGCTGGAAAACAACTCGAAGATGGTCGC---ACACTTCAAGATTAT 9280 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAG 24940 || |||||||||||| | ||||| |||||||| | || | || || || | | ||| Sbjct 9279 AATATTCAAAAGGAAGCTACACTCCACTTGGTCCTTCGTCTTCGTGGTGGTGTTATTGAA 9220 Query 24941 CCAAC 24945 ||||| Sbjct 9219 CCAAC 9215 >seq15 Length=259596 Score = 114 bits (126), Expect = 1e-20 Identities = 174/245 (71%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || | || || || || || || || || || ||| | Sbjct 136238 ATGCAAATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTCGAAAATGCA 136179 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | ||| | || || ||||| || || || || |||||||| ||||| |||||| Sbjct 136178 GATACCATCGAATCTGTGAAGCAAAAAATTCAGGATAAGGAAGGAATTCCTCCAGATCAA 136119 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCA-GATTAT 24880 ||| | | ||||| || || ||||| || || ||| ||| ||| ||| |||||| Sbjct 136118 CAAAGACTTATCTTCGCTGGAAAACAACTCGAAGATGGTCGT---ACACTTCAAGATTAT 136062 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAG 24940 || |||||||||||| | ||||| ||||||||| | || | || || || | | ||| Sbjct 136061 AATATTCAAAAGGAAGCTACACTCCACTTGGTGCTTCGTCTTCGTGGTGGTGTTATTGAA 136002 Query 24941 CCAAC 24945 ||||| Sbjct 136001 CCAAC 135997 >seq216 Length=89640 Score = 100 bits (110), Expect = 3e-16 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| | || || ||||| || || || || || ||| | | Sbjct 83268 ATGCAGATCTTTGTGAAAACTTTGACTGGAAAAACCATCACCCTTGAGGTTGAAAACGCT 83209 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || || ||||| |||||||| ||||| || ||||| || ||| Sbjct 83208 GACACAATTGAGTCAGTTAAGCAGAAGATTCAAGACAAGGAAGGTATTCCTCCGGACCAA 83149 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA--TTCGAGAAACA-TGTCAGATTAT 24880 || | | ||||| || || || || |||| || ||| ||| || ||| || Sbjct 83148 CAGAGACTTATCTTCGCTGGAAAGCAATTGGAAGACGGTCG---CACATTGCAAGACTAC 83092 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || |||||||| | ||||| || | ||| || ||||| | ||||| Sbjct 83091 AATATCCAAAAGGAGGCAACACTCCATCTTGTGCTGAGATTGAGAGGAGG 83042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449885818306600