Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq528 111 1e-19 seq216 105 4e-18 seq15 104 2e-17 >seq528 Length=44320 Score = 111 bits (122), Expect = 1e-19 Identities = 159/220 (72%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGT-GCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||||||| ||| | || ||| ||||| ||||| ||||| || || |||| |||| Sbjct 9245 AGGACCAAGTGGAGTGTAGCT-TCCTTTTGAATATTATAATCTTGAAGTGTGCGACCATC 9303 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||| ||||| |||||||| |||| ||| || ||| | || | || ||||| || Sbjct 9304 TTCGAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTATC 9363 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTC---ATTGGCCTCGACATCAACGGTTAT 34941 | || ||||| || || ||| | || | || ||| ||||| |||| ||| || Sbjct 9364 CTGAATCTTTTGCTTCACAGATTCAATAGTGTCTGCATTT---TCGACCTCAAGGGTGAT 9420 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGATA 34981 ||||||||| || | ||||| |||||||| ||||| ||| Sbjct 9421 GGTCTTTCCAGTCAATGTCTTCACAAAGATTTGCATTATA 9460 >seq216 Length=89640 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAA-TGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 ||||||| ||||| ||||| || || || | || ||| |||||| || || || ||||| Sbjct 83040 TTCCTCCTCTCAATCTCAGCACAAGATGGAGTGTTGC-CTCCTTTTGGATATTGTAGTCT 83098 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 | |||| | || |||| ||||||||| |||||||| |||| || ||||| | Sbjct 83099 TGCAATGTGCGACCGTCTTCCAATTGCTTTCCAGCGAAGATAAGTCTCTGTTGGTCCGGA 83158 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | || |||||||| | || || || || || || | || | ||| | || Sbjct 83159 GGAATACCTTCCTTGTCTTGAATCTTCTGCTTAACTGACTCAATTGTGTCAGCGTTTTCA 83218 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||| ||| ||||| ||||| || | || || |||||||||||||| Sbjct 83219 ACCTCAAGGGTGATGGTTTTTCCAGTCAAAGTTTTCACAAAGATCTGCAT 83268 >seq15 Length=259596 Score = 104 bits (114), Expect = 2e-17 Identities = 155/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGT-GCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || |||| ||| | || ||| ||||| ||||| ||||| || || | || |||| Sbjct 136027 AGCACCAAGTGGAGTGTAGCT-TCCTTTTGAATATTATAATCTTGAAGTGTACGACCATC 136085 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||| ||||| |||||||| |||| ||| || ||| | || | || ||||| || Sbjct 136086 TTCGAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTATC 136145 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTC---ATTGGCCTCGACATCAACGGTTAT 34941 | |||||||| || || ||| | || | || ||| ||||| |||| ||| || Sbjct 136146 CTGAATTTTTTGCTTCACAGATTCGATGGTATCTGCATTT---TCGACCTCAAGGGTGAT 136202 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||| || | ||||| |||||||| ||||| Sbjct 136203 GGTCTTTCCAGTCAATGTCTTCACAAAGATTTGCAT 136238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325684484146805