Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq216 111 2e-19 seq528 105 1e-17 seq15 105 1e-17 >seq216 Length=89640 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || ||||| ||||||||||||||||| | || || ||| | | Sbjct 83495 TGCAAATTTTTGTGAAGACATTGACAGGAAAAACAATTACCCTCGAAGTCGAAAACGCAG 83436 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| || ||| || | ||||| ||| ||| ||||| || || || ||||| | Sbjct 83435 ACACAATTGAATCTGTGAAGCAAAAAATTCAAGATAAGGAAGGAATCCCTCCGGATCAGC 83376 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| ||||| ||||| |||||| | || ||| |||||| | || || || | Sbjct 83375 AAAGACTTATTTTCGCAGGAAAACAACTCGAAGATGGTAGAACTCTCCAGGACTACAACA 83316 Query 146212 TACAAAAAGAA 146222 | ||||||||| Sbjct 83315 TCCAAAAAGAA 83305 >seq528 Length=44320 Score = 105 bits (116), Expect = 1e-17 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || ||||| || ||||| || || || |||| || ||| || | Sbjct 9455 TGCAAATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTCGAAAATGCAG 9396 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| || ||| || | || || || ||| ||||| ||||| || ||||||| Sbjct 9395 ACACTATTGAATCTGTGAAGCAAAAGATTCAGGATAAGGAAGGAATTCCTCCAGATCAAC 9336 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| || || || || |||||| | || ||| | | || | ||||||||||| Sbjct 9335 AAAGACTTATCTTCGCTGGAAAACAACTCGAAGATGGTCGCACACTTCAAGATTATAATA 9276 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| ||| | || |||| || || Sbjct 9275 TTCAAAAGGAAGCTACACTCCACTTGGT 9248 >seq15 Length=259596 Score = 105 bits (116), Expect = 1e-17 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || ||||| || ||||| || || || |||| || ||| || | Sbjct 136237 TGCAAATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTCGAAAATGCAG 136178 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || || ||| || | ||||| || ||| ||||| ||||| || ||||||| Sbjct 136177 ATACCATCGAATCTGTGAAGCAAAAAATTCAGGATAAGGAAGGAATTCCTCCAGATCAAC 136118 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| || || || || |||||| | || ||| | | || | ||||||||||| Sbjct 136117 AAAGACTTATCTTCGCTGGAAAACAACTCGAAGATGGTCGTACACTTCAAGATTATAATA 136058 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| ||| | || |||| || || Sbjct 136057 TTCAAAAGGAAGCTACACTCCACTTGGT 136030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786145812267400