Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq528 174 3e-38 seq15 167 5e-36 seq216 141 2e-28 >seq528 Length=44320 Score = 174 bits (192), Expect = 3e-38 Identities = 170/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||| || |||| ||| || || ||||||||||| || | | ||| Sbjct 9241 ACGAAGGACCAAGTGGAGTGTAGCTTCCTTTTGAATATTATAATCTTGAAGTGTGCGACC 9300 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||||||| Sbjct 9301 ATCTTCGAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTT 9360 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| ||||||||| || ||| |||||| || || | ||| || || | || || Sbjct 9361 ATCCTGAATCTTTTGCTTCACAGATTCAATAGTGTCTGCATTTTCGACCTCAAGGGTGAT 9420 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 ||||| || ||||| ||||| ||||| || |||||||| Sbjct 9421 GGTCTTTCCAGTCAATGTCTTCACAAAGATTTGCATTAT 9459 >seq15 Length=259596 Score = 167 bits (184), Expect = 5e-36 Identities = 167/217 (77%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||| || |||| ||| || || ||||||||||| || | | ||| Sbjct 136023 ACGAAGCACCAAGTGGAGTGTAGCTTCCTTTTGAATATTATAATCTTGAAGTGTACGACC 136082 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||||||| Sbjct 136083 ATCTTCGAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTT 136142 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| ||||| ||| || ||| ||| || ||||| | ||| || || | || || Sbjct 136143 ATCCTGAATTTTTTGCTTCACAGATTCGATGGTATCTGCATTTTCGACCTCAAGGGTGAT 136202 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || ||||| ||||| ||||| || |||||| Sbjct 136203 GGTCTTTCCAGTCAATGTCTTCACAAAGATTTGCATT 136239 >seq216 Length=89640 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 |||| || | |||||| || || || || || ||| ||||||| ||||| |||||| Sbjct 83294 TGCAATGTGGCTTCTTTTTGGATGTTGTAGTCCTGGAGAGTTCTACCATCTTCGAGTTGT 83353 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 ||||| || || || |||||||| ||||| ||||| |||||||||||||||||||| ||| Sbjct 83354 TTTCCTGCGAAAATAAGTCTTTGCTGATCCGGAGGGATTCCTTCCTTATCTTGAATTTTT 83413 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||| |||||| || || ||| ||||| | || || || || |||||| Sbjct 83414 TGCTTCACAGATTCAATTGTGTCTGCGTTTTCGACTTCGAGGGTAATTGTTTTTCCTGTC 83473 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 || ||||| ||||| || ||||| Sbjct 83474 AATGTCTTCACAAAAATTTGCAT 83496 Score = 116 bits (128), Expect = 7e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||||||| | ||| || | || || || | || || || ||||| || || Sbjct 83042 CCTCCTCTCAATCTCAGCACAAGATGGAGTGTTGCCTCCTTTTGGATATTGTAGTCTTGC 83101 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||||||||| | ||| |||||||| ||||| ||||| ||||| || ||||| Sbjct 83102 AATGTGCGACCGTCTTCCAATTGCTTTCCAGCGAAGATAAGTCTCTGTTGGTCCGGAGGA 83161 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| ||||||||||| ||| || || ||||| || ||| ||| || Sbjct 83162 ATACCTTCCTTGTCTTGAATCTTCTGC-TTAACTGACTCAATTGTGTCAGCGTTTTCAAC 83220 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || || || ||||| || || ||||| |||||||| Sbjct 83221 CTCAAGGGTGATGGTTTTTCCAGTCAAAGTTTTCACAAAGATCTGCAT 83268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981800845610205