Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq216 141 2e-28 seq528 98.7 2e-15 seq15 93.3 1e-13 >seq216 Length=89640 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| | || |||||||| ||||| | || || |||| ||||| Sbjct 83265 CAGATCTTTGTGAAAACTTTGACTGGAAAAACCATCACCCTTGAGGTTGAAAACGCTGAC 83206 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || ||||| ||||| ||||||||||| || ||||| ||| |||||| || Sbjct 83205 ACAATTGAGTCAGTTAAGCAGAAGATTCAAGACAAGGAAGGTATTCCTCCGGACCAACAG 83146 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||||||||||||| |||||||| |||||||| || | || ||| || ||||| || Sbjct 83145 AGACTTATCTTCGCTGGAAAGCAATTGGAAGACGGTCGCACATTGCAAGACTACAATATC 83086 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 || || ||| | || || || ||||| ||||| Sbjct 83085 CAAAAGGAGGCAACACTCCATCTTGTGCTGAGA 83053 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 ||||||||||| || || | ||||| |||| | |||||| | ||||| || |||||| Sbjct 83472 ACAGGAAAAACAATTACCCTCGAAGTCGAAAACGCAGACACAATTGAATCTGTGAAGCAA 83413 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || |||||||| || |||||||| ||||| ||||||||||| ||||| ||||| Sbjct 83412 AAAATTCAAGATAAGGAAGGAATCCCTCCGGATCAGCAAAGACTTATTTTCGCAGGAAAA 83353 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || | |||||||| || ||| | || |||||| |||| ||||| | || | || Sbjct 83352 CAACTCGAAGATGGTAGAACTCTCCAGGACTACAACATCCAAAAAGAAGCCACATTGCAT 83293 Query 206374 CTTGTTTTGAGACTTCG 206390 ||||| ||||||||||| Sbjct 83292 CTTGTGTTGAGACTTCG 83276 >seq528 Length=44320 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || ||||| | || || |||| | | ||||| | ||||| || |||||| Sbjct 9432 ACTGGAAAGACCATCACCCTTGAGGTCGAAAATGCAGACACTATTGAATCTGTGAAGCAA 9373 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || ||||||||| || || ||||||||||||||||| ||||| Sbjct 9372 AAGATTCAGGATAAGGAAGGAATTCCTCCAGATCAACAAAGACTTATCTTCGCTGGAAAA 9313 Query 206314 CAGTTGGAAGATGG 206327 || | |||||||| Sbjct 9312 CAACTCGAAGATGG 9299 >seq15 Length=259596 Score = 93.3 bits (102), Expect = 1e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || ||||| | || || |||| | | || || ||||||| || |||||| Sbjct 136214 ACTGGAAAGACCATCACCCTTGAGGTCGAAAATGCAGATACCATCGAATCTGTGAAGCAA 136155 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || ||||| || || ||||||||| || || ||||||||||||||||| ||||| Sbjct 136154 AAAATTCAGGATAAGGAAGGAATTCCTCCAGATCAACAAAGACTTATCTTCGCTGGAAAA 136095 Query 206314 CAGTTGGAAGATGG 206327 || | |||||||| Sbjct 136094 CAACTCGAAGATGG 136081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181789077344495