Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq216 147 2e-30 seq15 107 2e-18 seq528 98.7 9e-16 >seq216 Length=89640 Score = 147 bits (162), Expect = 2e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 ||||||||| | ||||| || ||||| || |||||| | || || ||||||||||| | Sbjct 83499 AACATGCAAATTTTTGTGAAGACATTGACAGGAAAAACAATTACCCTCGAAGTCGAAAAC 83440 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 || || || || || || ||||||||| ||||| || || || || || ||| Sbjct 83439 GCAGACACAATTGAATCTGTGAAGCAAAAAATTCAAGATAAGGAAGGAATCCCTCCGGAT 83380 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 ||||||||||| |||| || || |||||||||||||||| ||||| | || || ||| Sbjct 83379 CAGCAAAGACTTATTTTCGCAGGAAAACAACTCGAAGATGGTAGAACTCTCCAGGACTAC 83320 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 || || ||||||||| |||| | ||| | ||||| ||| Sbjct 83319 AACATCCAAAAAGAAGCCACATTGCATCTTGTGTTGAGA 83281 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| || || |||||| | ||||| | || || ||| | Sbjct 83268 ATGCAGATCTTTGTGAAAACTTTGACTGGAAAAACCATCACCCTTGAGGTTGAAAACGCT 83209 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| ||| || || || ||| || || || ||||| || || || || Sbjct 83208 GACACAATTGAGTCAGTTAAGCAGAAGATTCAAGACAAGGAAGGTATTCCTCCGGACCAA 83149 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-ATGTCAGCGATTACAA 25353 || ||||| || | || || || ||| | ||||| | | | | || || || ||||| Sbjct 83148 CAGAGACTTATCTTCGCTGGAAAGCAATTGGAAGACGGTCGCACATTGCAA-GACTACAA 83090 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||| ||||| || | || | ||| | ||| | |||||||||||||||| Sbjct 83089 TATCCAAAAGGAGGCAACACTCCATCTTGTGCTGAGATTGAGAGGAGGAA 83040 >seq15 Length=259596 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || ||||| || ||||| | ||||| | || |||||| Sbjct 136238 ATGCAAATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTCGAAAATGCA 136179 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| || || ||||||||| ||||| || || || || || ||||| Sbjct 136178 GATACCATCGAATCTGTGAAGCAAAAAATTCAGGATAAGGAAGGAATTCCTCCAGATCAA 136119 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-ATGTCAGCGATTACAA 25353 |||||||| || | || || |||||||||||||||| | | | | ||| ||||| || Sbjct 136118 CAAAGACTTATCTTCGCTGGAAAACAACTCGAAGATGGTCGTACACTTCAA-GATTATAA 136060 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTG 25384 ||||||||| ||| | || | || || ||| Sbjct 136059 TATTCAAAAGGAAGCTACACTCCACTTGGTG 136029 >seq528 Length=44320 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || ||||| || ||||| | ||||| | || |||||| Sbjct 9456 ATGCAAATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTCGAAAATGCA 9397 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || || || ||||| ||| ||||| || || || || || ||||| Sbjct 9396 GACACTATTGAATCTGTGAAGCAAAAGATTCAGGATAAGGAAGGAATTCCTCCAGATCAA 9337 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-ATGTCAGCGATTACAA 25353 |||||||| || | || || |||||||||||||||| | | | | ||| ||||| || Sbjct 9336 CAAAGACTTATCTTCGCTGGAAAACAACTCGAAGATGGTCGCACACTTCAA-GATTATAA 9278 Query 25354 TATTCAAAAAGAA 25366 ||||||||| ||| Sbjct 9277 TATTCAAAAGGAA 9265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445082744090400