Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq216 111 1e-19 seq15 87.8 1e-12 seq528 86.0 5e-12 >seq216 Length=89640 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 106256 AAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACC 106315 ||| |||||||||||||| || |||||||| || || || |||||| | ||| ||| Sbjct 83500 AAACATGCAAATTTTTGTGAAGACATTGACAGGAAAAACAATTACCCTCGAAGTCGAAAA 83441 Query 106316 CGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGA 106375 || || | ||| ||||| ||||||||| || || ||||| | || || Sbjct 83440 CGCAGACACAATTGAATCTGTGAAGCAAAAAATTCAAGATAAGGAAGGAATCCCTCCGGA 83381 Query 106376 TCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTA 106435 ||| ||||| ||||||| || || |||||| | |||||| || |||| | || || Sbjct 83380 TCAGCAAAGACTTATTTTCGCAGGAAAACAACTCGAAGATGGTAGAACTCTCCAGGACTA 83321 Query 106436 CAACATACAAAAAGAATCTACACTACATTTAGTATTGAG 106474 |||||| ||||||||| | ||| | ||| | || ||||| Sbjct 83320 CAACATCCAAAAAGAAGCCACATTGCATCTTGTGTTGAG 83282 >seq15 Length=259596 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/219 (68%), Gaps = 18/219 (8%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACC------GTGGAAA---C 106309 ||||||||| ||||| || ||||||||||| |||||||| ||| || |||| | Sbjct 136239 AATGCAAATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTCGAAAATGC 136180 Query 106310 AGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCC 106369 ||| || ||| ||| ||||| ||||||||| || || ||||| | || Sbjct 136179 AGATACCATCGAATCT---------GTGAAGCAAAAAATTCAGGATAAGGAAGGAATTCC 136129 Query 106370 CGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGG 106429 ||||||||||| ||||| | || || |||||| | |||||| | || | Sbjct 136128 TCCAGATCAACAAAGACTTATCTTCGCTGGAAAACAACTCGAAGATGGTCGTACACTTCA 136069 Query 106430 CGATTACAACATACAAAAAGAATCTACACTACATTTAGT 106468 ||||| || || ||||| ||| ||||||| || || || Sbjct 136068 AGATTATAATATTCAAAAGGAAGCTACACTCCACTTGGT 136030 >seq528 Length=44320 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||| ||||| || ||||||||||| |||||||| ||| | || ||| | Sbjct 9457 AATGCAAATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTCGAAAATGC 9398 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 || || ||| ||||| ||||| ||| || || ||||| | || ||||| Sbjct 9397 AGACACTATTGAATCTGTGAAGCAAAAGATTCAGGATAAGGAAGGAATTCCTCCAGATCA 9338 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 |||||| ||||| | || || |||||| | |||||| | || | ||||| || Sbjct 9337 ACAAAGACTTATCTTCGCTGGAAAACAACTCGAAGATGGTCGCACACTTCAAGATTATAA 9278 Query 106439 CATACAAAAAGAATCTACACTACATTTAGT 106468 || ||||| ||| ||||||| || || || Sbjct 9277 TATTCAAAAGGAAGCTACACTCCACTTGGT 9248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402319327393760