Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq216 129 6e-25 seq528 86.0 6e-12 seq15 84.2 2e-11 >seq216 Length=89640 Score = 129 bits (142), Expect = 6e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 |||| |||||| || || | |||| ||| ||||| ||||||||||| | || | Sbjct 83279 AGTCTCAACACAAGATGCAATGTGGCTTCTTTTTGGATGTTGTAGTCCTGGAGAGTTCTA 83338 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || ||||| ||||| ||||| ||||| | | |||||||| || || || ||||| Sbjct 83339 CCATCTTCGAGTTGTTTTCCTGCGAAAATAAGTCTTTGCTGATCCGGAGGGATTCCTTCC 83398 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||||||||| || || | || | |||||| | ||| || ||||| ||| Sbjct 83399 TTATCTTGAATTTTTTGCTTCACAGATTCAATTGTGTCTGCGTTTTCGACTTCGAGGGTA 83458 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || ||||| || || || || || || ||||||||||| || Sbjct 83459 ATTGTTTTTCCTGTCAATGTCTTCACAAAAATTTGCATGTT 83499 >seq528 Length=44320 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || | |||||||||||| || || || || ||| || || ||||| || Sbjct 9253 GTGGAGTGTAGCTTCCTTTTGAATATTATAATCTTGAAGTGTGCGACCATCTTCGAGTTG 9312 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || || || || | | || ||||| || || || ||||| || || ||||| || Sbjct 9313 TTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTATCCTGAATCTT 9372 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| || || | || | ||||| | ||| || || || || ||||| || || || Sbjct 9373 TTGCTTCACAGATTCAATAGTGTCTGCATTTTCGACCTCAAGGGTGATGGTCTTTCCAGT 9432 Query 134690 TAAAGTTTTAACGAAAATTTGCATT 134714 || || || || || ||||||||| Sbjct 9433 CAATGTCTTCACAAAGATTTGCATT 9457 >seq15 Length=259596 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| || || | |||||||||||| || || || || || || Sbjct 136021 AGACGAAGCACCAAGTGGAGTGTAGCTTCCTTTTGAATATTATAATCTTGAAGTGTACGA 136080 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || ||||| ||||| || || || || | | || ||||| || || || ||||| Sbjct 136081 CCATCTTCGAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCC 136140 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||||||||| || || | || | || || | ||| || || || || Sbjct 136141 TTATCCTGAATTTTTTGCTTCACAGATTCGATGGTATCTGCATTTTCGACCTCAAGGGTG 136200 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| || || || || || || || || ||||||||| Sbjct 136201 ATGGTCTTTCCAGTCAATGTCTTCACAAAGATTTGCATT 136239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505385164879400