Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq528 93.3 4e-14 seq216 91.5 1e-13 >seq528 Length=44320 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTC 27097 ||||| || | |||| || ||||||||||| || || | | || |||| | ||||| Sbjct 9248 ACCAAGTGGAGTGTAGCTTCCTTTTGAATATTATAATC-TTGAAGTGTGCGACCATCTTC 9306 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||| ||||| || ||| | || || | |||||||| || || | || || ||||| Sbjct 9307 GAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTATCCTG 9366 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||| | |||| | ||| | |||||||| ||| || || || || || | || Sbjct 9367 AATCTTTTGCTTCACAGATTCAATAGTGTCTGCATTTTCGACCTCAAGGGTGATGGTCTT 9426 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||| || ||||||||||||||||| Sbjct 9427 TCCAGTCAATGTCTTCACAAAGATTTGCAT 9456 >seq216 Length=89640 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| | || || | ||| | || | || ||||| ||||||||||| | Sbjct 83042 CCTCCTCTCAATCTCAGCACAAGATGGAGTGTTGCCTCCTTTTGGATATTGTAGTCTTGC 83101 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| ||||||| | || || || ||| | || || | |||||| ||||| || Sbjct 83102 AATGTGCGACCGTCTTCCAATTGCTTTCCAGCGAAGATAAGTCTCTGTTGGTCCGGAGGA 83161 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || || || ||||| | || | | || | ||||| | | |||||| Sbjct 83162 ATACCTTCCTTGTCTTGAATCTTCTGCTTAACTGACTCAATTGTGTCAGCGTTTTCAACC 83221 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | ||| || |||| ||||||||||||||| |||||| Sbjct 83222 TCAAGGGTGATGGTTTTTCCAGTCAAAGTTTTCACAAAGATCTGCATA 83269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424923550229640