Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq58 109 7e-19 seq1672 82.4 1e-10 seq185 82.4 1e-10 seq108 82.4 1e-10 >seq58 Length=166100 Score = 109 bits (120), Expect = 7e-19 Identities = 377/579 (65%), Gaps = 28/579 (5%) Strand=Plus/Minus Query 182294 GAAATACTCCCGAGCTTCAGCACTCGTGCTGGTACCCAGACCCTTGTAGTACTTGATTTT 182353 ||| ||||| ||||||||| ||| ||||||||||||||| ||||||||||| || Sbjct 91663 GAAGTACTCTTTCGCTTCAGCAGGTGTGGAGGTACCCAGACCCTTATAGTACTTGATCTT 91604 Query 182354 CCAACC-----TGCTTGTCCGCTACCATACCAGGTACGGAAA-GCCGAATCTGTATAGAA 182407 ||| || ||| ||| || || ||| | | ||| | || || || || || Sbjct 91603 CCATCCGCGGGTGCCGTTCCTCTGCCT--CCAT-TCCTCAAACGATGATTCAGTGTAAAA 91547 Query 182408 TGATTT---TGATTGACCACCCTTGGAAGCCTTGATGATTGGTGTCACCATAGAAACCAC 182464 ||| || || || || || | || |||||||||||||| | ||| | Sbjct 91546 TGACTTCACTGTTTTTCCT---TTCGTTGCTTTGATGATTGGTGTGAT----GAACTCCT 91494 Query 182465 G---AAACCCA----ACTTGAGGAGACTGGGCCAGAAGTAGTGGATCATATTTAGGATGA 182517 | ||| || | || | ||| ||||| | | | || ||| || | || | Sbjct 91493 GCATAAAGCCGTTGTATTTCAAAAGAGATGGCCACATCTTTTCGAACATGTTGATGAGAA 91434 Query 182518 GACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACCATAGC 182577 | |||||||||||||| ||||||| ||| ||| | ||||||||| ||| | ||||| | Sbjct 91433 GTCCCTTGATGTGAGACCCATCATGATCCTGATCAGCCATAATCATCAGATGCCCATATC 91374 Query 182578 GAAGTTCAGAAACATCTTGGTAGTCTTTTCCTTGTTGAAGACCAAGGATCTTCTTGAGAT 182637 || || || ||| | || | ||| ||||| ||||| || | ||| ||||| | || Sbjct 91373 TCAGATCCTTAATATCATCATAATGTTTGCCTTGCTGAAGCCCCATGATTTTCTTTATAT 91314 Query 182638 CATTGAACTCCTGGTTTGATGTAAGCTGTGCCACCGAAGCGTCCCGAACATTCTTACATT 182697 | || || ||| | ||||||| | | || || | ||||| | || Sbjct 91313 TTGTAAATTCAGCATTTTGCGACAGCTGTGATGCTGTTGCATCTCTCACATTGATCACTT 91254 Query 182698 TACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACCCGCAACCG 182757 |||| | ||||| ||||| || || | || | ||||| || || || ||||| | Sbjct 91253 TACCTCTCAGTGGAAACACTCCATAATTGTCTCTACCAATCACTCCAAGCCCTGCAACAG 91194 Query 182758 CGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACACTTTC-CAGATTGTGCC 182816 | || | ||| || ||||| || || || | ||| || || || || | | ||| | Sbjct 91193 CAAGCGATTTGGCAGAATCTCCTTCGGTCAGAATAAGTGTGCAGTTACGCGCATTACG-A 91135 Query 182817 GTACCCGCCTTGTTCGCGTCATCCAACTTGGGAATACCG 182855 ||||| ||| |||| || || || ||||| ||||| ||| Sbjct 91134 GTACCAGCCATGTTGGCATCTTCTAACTTTGGAATTCCG 91096 >seq1672 Length=5429 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 145280 AAGCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAA 145339 |||||||||||||||| |||| | ||| | ||||| ||||||| || |||||||| || Sbjct 5415 AAGCTCTTATAGTGTAATGGTTAGCACCTAGGACTCTGAATCCTGTAATCCTGGTTCGAA 5356 Query 145340 TCCAGGTAGGAGC 145352 ||||||||||||| Sbjct 5355 TCCAGGTAGGAGC 5343 >seq185 Length=101656 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 145280 AAGCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAA 145339 |||||||||||||||| |||| | ||| | ||||| ||||||| || |||||||| || Sbjct 32233 AAGCTCTTATAGTGTAATGGTTAGCACCTAGGACTCTGAATCCTGTAATCCTGGTTCGAA 32174 Query 145340 TCCAGGTAGGAGC 145352 ||||||||||||| Sbjct 32173 TCCAGGTAGGAGC 32161 >seq108 Length=125192 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 145280 AAGCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAA 145339 |||||| ||||||||| |||| | ||| | ||||||||||||| || |||||||| || Sbjct 36327 AAGCTCCTATAGTGTAATGGTTAGCACCTAGGACTTTGAATCCTGTAATCCTGGTTCGAA 36268 Query 145340 TCCAGGTAGGAGC 145352 ||||||||||||| Sbjct 36267 TCCAGGTAGGAGC 36255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628015553412000