Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq58 102 9e-17 >seq58 Length=166100 Score = 102 bits (112), Expect = 9e-17 Identities = 237/355 (67%), Gaps = 2/355 (1%) Strand=Plus/Minus Query 152763 GAACATGTTGAGGACCAAGCCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTCATGAT 152822 ||||||||||| || | ||||||||||| || || ||| ||||| || | ||| || Sbjct 91450 GAACATGTTGATGAGAAGTCCCTTGATGTGAGACCCATCATGATCCTGATCAGCCATAAT 91391 Query 152823 CATCAGACGACCGTAGCGCAGGTCACGTAGTGAC-CCGTAGACCTTTCCATGTTGAAGCC 152881 ||||||| | || || | ||| || | || | | | || || || || ||||||| Sbjct 91390 CATCAGATGCCCATATCTCAGATC-CTTAATATCATCATAATGTTTGCCTTGCTGAAGCC 91332 Query 152882 CGAGGATCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCTGTTTCACCGTGGCAT 152941 | | ||| || || | || | |||||| |||| | | || |||| | || |||| Sbjct 91331 CCATGATTTTCTTTATATTTGTAAATTCAGCATTTTGCGACAGCTGTGATGCTGTTGCAT 91272 Query 152942 CCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTTGCGGCCTACAA 153001 | | |||||| | || || | ||||||||||| || | || | || | | Sbjct 91271 CTCTCACATTGATCACTTTACCTCTCAGTGGAAACACTCCATAATTGTCTCTACCAATCA 91212 Query 153002 CGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAGCGTAC 153061 | | || || |||| |||||| | ||| || || || || ||||| | |||||| || | Sbjct 91211 CTCCAAGCCCTGCAACAGCAAGCGATTTGGCAGAATCTCCTTCGGTCAGAATAAGTGTGC 91152 Query 153062 AGTCGTGAGACCGATGAGTACCGGCCCAGTTGGCGTCGTCAAGCTTGGGGATTCC 153116 ||| | | | ||||||| ||| |||||| || || | ||| || ||||| Sbjct 91151 AGTTACGCGCATTACGAGTACCAGCCATGTTGGCATCTTCTAACTTTGGAATTCC 91097 Score = 91.5 bits (100), Expect = 2e-13 Identities = 235/355 (66%), Gaps = 10/355 (3%) Strand=Plus/Minus Query 117997 GATCATGTTCAGCACGAGCCCCTTGATATGGGAACCGTCCAGATCCGCATCGGTCATGAT 118056 || |||||| | | || |||||||| || || || || ||||| ||| | ||| || Sbjct 91450 GAACATGTTGATGAGAAGTCCCTTGATGTGAGACCCATCATGATCCTGATCAGCCATAAT 91391 Query 118057 CATCAGGCGGCCGTACCGTAAATCTCTCAGGGAGTTATAAACCTTACCATGTTGGAGCCC 118116 |||||| | || || | | ||| | | | |||| || || || || ||||| Sbjct 91390 CATCAGATGCCCATATCTCAGATCCTTAATATCATCATAATGTTTGCCTTGCTGAAGCCC 91331 Query 118117 GAGGATCTTTTTAAGGTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATGGTGGCGTC 118176 | ||| || || | || | |||||| |||||| || || |||| | || || || Sbjct 91330 CATGATTTTCTTTATATTTGTAAATTCAGCATTTTGCGACAGCTGTGATGCTGTTGCATC 91271 Query 118177 CCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCCACAAC 118236 | || ||| | ||||| | |||||||||||| ||| | ||||| | || | || Sbjct 91270 TCTCACATTGATCACTTTACCTCTCAGTGGAAACACTCCATAATTGTCTCTACCAATCAC 91211 Query 118237 GCTCAAG-CCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGAGTGC 118295 | |||| || |||| |||||| | || || || || || ||||| | |||||| |||| Sbjct 91210 TC-CAAGCCCTGCAACAGCAAGCGATTTGGCAGAATCTCCTTCGGTCAGAATAAGTGTGC 91152 Query 118296 ACTCGGTGCTGCG----ATGAGTACCGGCCCAATTAGCATCATCCAGCTTCGGAA 118346 | || ||| | ||||||| ||| || ||||| || | ||| |||| Sbjct 91151 A----GTTACGCGCATTACGAGTACCAGCCATGTTGGCATCTTCTAACTTTGGAA 91101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547201669781000