Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq15 154 2e-32 seq528 150 2e-31 seq216 102 9e-17 seq58 82.4 9e-11 >seq15 Length=259596 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| ||||| | || || ||||| || || |||||||| || | Sbjct 136239 AATGCAAATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTCGAAAATGC 136180 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | | | ||||| ||||||||||| ||||| |||||||||||||| || Sbjct 136179 AGATACCATCGAATCTGTGAAGCAAAAAATTCAGGATAAGGAAGGAATTCCTCCAGATCA 136120 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || | || || || ||||| || |||||||| |||| |||||| || ||| ||||| Sbjct 136119 ACAAAGACTTATCTTCGCTGGAAAACAACTCGAAGATGGTCGTACACTTCAAGATTATAA 136060 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | ||||||||| | || || || | || | |||||||| ||||| Sbjct 136059 TATTCAAAAGGAAGCTACACTCCACTTGGTGCTTCGTCTTCGTGGTGG 136012 >seq528 Length=44320 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27402 TATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC 27461 |||||||||||||||||| ||||| | || || ||||| || || |||||||| || Sbjct 9460 TATAATGCAAATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTCGAAAA 9401 Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 | || | |||| | | ||||| || |||||||| ||||| |||||||||||||| Sbjct 9400 TGCAGACACTATTGAATCTGTGAAGCAAAAGATTCAGGATAAGGAAGGAATTCCTCCAGA 9341 Query 27522 CCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 || || | || || || ||||| || |||||||| |||| ||| || || ||| || Sbjct 9340 TCAACAAAGACTTATCTTCGCTGGAAAACAACTCGAAGATGGTCGCACACTTCAAGATTA 9281 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| | ||||||||| | || || || | ||| | |||||||| ||||| Sbjct 9280 TAATATTCAAAAGGAAGCTACACTCCACTTGGTCCTTCGTCTTCGTGGTGG 9230 >seq216 Length=89640 Score = 102 bits (112), Expect = 9e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || | || || || || || || ||||||||||| | | Sbjct 83268 ATGCAGATCTTTGTGAAAACTTTGACTGGAAAAACCATCACCCTTGAGGTTGAAAACGCT 83209 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| | ||| || ||||| |||||||| || |||||||| ||||| Sbjct 83208 GACACAATTGAGTCAGTTAAGCAGAAGATTCAAGACAAGGAAGGTATTCCTCCGGACCAA 83149 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || ||||| |||||| | || || | ||| || | |||||| ||| Sbjct 83148 CAGAGACTTATCTTCGCTGGAAAGCAATTGGAAGACGGTCGCACATTGCAAGACTACAAT 83089 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 |||||||||| | || || ||||| || Sbjct 83088 ATCCAAAAGGAGGCAACACTCCATCTTGT 83060 >seq58 Length=166100 Score = 82.4 bits (90), Expect = 9e-11 Identities = 239/362 (66%), Gaps = 7/362 (2%) Strand=Plus/Plus Query 31197 TACG-GGAATTCCGAAGCTCGACGACGCCAACTGGGCCGGTACCCACAAGTCGCACGAGT 31255 |||| |||||||| ||| | || || |||||| ||| ||||| | || ||| | | Sbjct 91092 TACGCGGAATTCCAAAGTTAGAAGATGCCAACATGGCTGGTACTCGTAATGCGCGTAACT 91151 Query 31256 GCACGCTTATTATTACCGAGGGTGACTCGGCAAAGGCGCTTGCTATTGCTGG-CTTG-AG 31313 |||| |||||| | ||||| || || || || || |||||||| |||| || |||| || Sbjct 91152 GCACACTTATTCTGACCGAAGGAGATTCTGCCAAATCGCTTGCTGTTGCAGGGCTTGGAG 91211 Query 31314 TGTTGTGGGGCG-CAATGCGTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTC 31372 || | | | | |||| | || |||||||| || |||| || | || || Sbjct 91212 TGATTGGTAGAGACAAT---TATGGAGTGTTTCCACTGAGAGGTAAAGTGATCAATGTGA 91268 Query 31373 GTGACGCCTCCGTTAAACAGGTTACGGATAATGAAGAGTTTTCCAACCTGAAAAAGATCC 31432 | || || | | |||| | || | |||| || ||| | || | || || ||| Sbjct 91269 GAGATGCAACAGCATCACAGCTGTCGCAAAATGCTGAATTTACAAATATAAAGAAAATCA 91328 Query 31433 TCGGGCTTCAGCATGGCAAGGTATATAATTCACTGAGAGAATTGCGGTACGGTCGCCTCA 31492 | ||||||||||| ||||| ||| || | | || || | || || | || | Sbjct 91329 TGGGGCTTCAGCAAGGCAAACATTATGATGATATTAAGGATCTGAGATATGGGCATCTGA 91388 Query 31493 TGATTATGACCGACGCAGATCTCGACGGCAGTCACATCAAGGGTCTTGTCCTAAATATGT 31552 |||||||| | || |||| || || |||||||||||| ||| || | || |||| Sbjct 91389 TGATTATGGCTGATCAGGATCATGATGGGTCTCACATCAAGGGACTTCTCATCAACATGT 91448 Query 31553 TC 31554 || Sbjct 91449 TC 91450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570295464996400