Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq216 107 2e-18 seq15 91.5 1e-13 seq528 89.7 4e-13 >seq216 Length=89640 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||| |||| || || | || || ||||| || ||| | Sbjct 83268 ATGCAGATCTTTGTGAAAACTTTGACTGGAAAAACCATCACCCTTGAGGTTGAAAACGCT 83209 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | |||||| || || || || ||||||||||| ||||| || || || || ||| Sbjct 83208 GACACAATTGAGTCAGTTAAGCAGAAGATTCAAGACAAGGAAGGTATTCCTCCGGACCAA 83149 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTC-CGATTACAA 27166 ||| | | || | ||| || || |||||||||||| | ||| | || | || ||||| Sbjct 83148 CAGAGACTTATCTTCGCTGGAAAGCAATTGGAAGAC-GGTCGCACATTGCAAGACTACAA 83090 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||| | || | ||| | || || | ||| | || || || Sbjct 83089 TATCCAAAAGGAGGCAACACTCCATCTTGTGCTGAGATTGAGAGGAGGAAT 83039 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || || |||| || || | ||||| || ||||| ||| | Sbjct 83497 CATGCAAATTTTTGTGAAGACATTGACAGGAAAAACAATTACCCTCGAAGTCGAAAACGC 83438 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| || || |||||||||||||| || ||||| || || || ||||| Sbjct 83437 AGACACAATTGAATCTGTGAAGCAAAAAATTCAAGATAAGGAAGGAATCCCTCCGGATCA 83378 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCC--GATTAC 27164 || | | || | ||| || |||||| | ||||| || || | ||| || ||| Sbjct 83377 GCAAAGACTTATTTTCGCAGGAAAACAACTCGAAGATGGTAGAAC--TCTCCAGGACTAC 83320 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| || | || || ||| | || ||| | | || ||||| || Sbjct 83319 AACATCCAAAAAGAAGCCACATTGCATCTTGTGTTGAGACTTCGTGGTGGTAT 83267 >seq15 Length=259596 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 26977 ATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAG 27036 |||| | ||| ||||| || ||||| || || |||| || ||| | || || ||||| | Sbjct 136249 ATTTCTCCGCAATGCAAATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGG 136190 Query 27037 TGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATAC 27096 | ||| | || | || || || || ||||||||||| || || ||||| || | Sbjct 136189 TCGAAAATGCAGATACCATCGAATCTGTGAAGCAAAAAATTCAGGATAAGGAAGGAATTC 136130 Query 27097 CACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTT 27156 | || |||||||| | | || | ||| || |||||| | ||||| || || || Sbjct 136129 CTCCAGATCAACAAAGACTTATCTTCGCTGGAAAACAACTCGAAGATGGTCGTACACTTC 136070 Query 27157 CCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| || ||||||||||| | || | || ||||| | ||| | || ||||| Sbjct 136069 AAGATTATAATATTCAAAAGGAAGCTACACTCCACTTGGTGCTTCGTCTTCGTGGTGG 136012 >seq528 Length=44320 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || |||| || ||| | || || ||||| || ||| | Sbjct 9456 ATGCAAATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTCGAAAATGCA 9397 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| || || ||||| ||||| || || ||||| || || || |||||| Sbjct 9396 GACACTATTGAATCTGTGAAGCAAAAGATTCAGGATAAGGAAGGAATTCCTCCAGATCAA 9337 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | ||| || |||||| | ||||| || || || ||||| || Sbjct 9336 CAAAGACTTATCTTCGCTGGAAAACAACTCGAAGATGGTCGCACACTTCAAGATTATAAT 9277 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||||||||| | || | || ||||| | ||| | || ||||| Sbjct 9276 ATTCAAAAGGAAGCTACACTCCACTTGGTCCTTCGTCTTCGTGGTGG 9230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434907010574400