Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq528 159 8e-34 seq15 154 3e-32 seq216 149 1e-30 >seq528 Length=44320 Score = 159 bits (176), Expect = 8e-34 Identities = 171/226 (76%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| | ||| || || | || ||||| || |||||||| ||| || Sbjct 9235 ACGAAGACGAAGGACCAAGTGGAGTGTAGCTTCCTTTTGAATATTATAATCTTGAAGTGT 9294 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| || || || || ||||||||||| | |||||| || ||||||| ||| Sbjct 9295 GCGACCATCTTCGAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGAATTCC 9354 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||||| |||||||| ||||| ||| || ||||| | |||| ||||| || Sbjct 9355 TTCCTTATCCTGAATCTTTTGCTTCACAGATTCAATAGTGTCTGCATTTTCGACCTCAAG 9414 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTA 211118 ||||| |||||||| || | ||||| ||||| | |||||| || Sbjct 9415 GGTGATGGTCTTTCCAGTCAATGTCTTCACAAAGATTTGCATTATA 9460 >seq15 Length=259596 Score = 154 bits (170), Expect = 3e-32 Identities = 168/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| || || | || ||||| || |||||||| ||| || Sbjct 136017 ACGAAGACGAAGCACCAAGTGGAGTGTAGCTTCCTTTTGAATATTATAATCTTGAAGTGT 136076 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| || || || || ||||||||||| | |||||| || ||||||| ||| Sbjct 136077 ACGACCATCTTCGAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGAATTCC 136136 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||||| || ||||| ||||| ||||||||| || | |||| ||||| || Sbjct 136137 TTCCTTATCCTGAATTTTTTGCTTCACAGATTCGATGGTATCTGCATTTTCGACCTCAAG 136196 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| |||||||| || | ||||| ||||| | |||||| Sbjct 136197 GGTGATGGTCTTTCCAGTCAATGTCTTCACAAAGATTTGCATT 136239 >seq216 Length=89640 Score = 149 bits (164), Expect = 1e-30 Identities = 168/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||||||||| | ||||| || | |||| |||||||||||||| || ||| || || Sbjct 83275 ACGAAGTCTCAACACAAGATGCAATGTGGCTTCTTTTTGGATGTTGTAGTCCTGGAGAGT 83334 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 || |||||||| || || || |||||||| ||||| | ||| || || ||||| | ||| Sbjct 83335 TCTACCATCTTCGAGTTGTTTTCCTGCGAAAATAAGTCTTTGCTGATCCGGAGGGATTCC 83394 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| || || || ||||| ||||| ||| || ||||| | | |||| || ||||| Sbjct 83395 TTCCTTATCTTGAATTTTTTGCTTCACAGATTCAATTGTGTCTGCGTTTTCGACTTCGAG 83454 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || ||||| || | ||||| ||||| | ||||| || Sbjct 83455 GGTAATTGTTTTTCCTGTCAATGTCTTCACAAAAATTTGCATGTT 83499 Score = 145 bits (160), Expect = 2e-29 Identities = 164/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCC-GCAAGGGTCCTTC 210957 ||| || ||||| || || || | ||| |||||||| || || || |||| | | | | Sbjct 83053 TCTCAGCACAAGATGGAGTGTTGCCTCCTTTTGGATATTGTAGTCTTGCAATG-TGCGAC 83111 Query 210958 CATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCT 211017 | ||||||| ||||| || ||||||||||| | |||||||| ||||||| ||||||| Sbjct 83112 CGTCTTCCAATTGCTTTCCAGCGAAGATAAGTCTCTGTTGGTCCGGAGGAATACCTTCCT 83171 Query 211018 TGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGA 211077 |||| || ||||| || || || || || ||||||| | |||||||||| || |||| Sbjct 83172 TGTCTTGAATCTTCTGCTTAACTGACTCAATTGTGTCAGCGTTTTCAACCTCAAGGGTGA 83231 Query 211078 TCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || ||||| || | ||| || ||||| | |||||| Sbjct 83232 TGGTTTTTCCAGTCAAAGTTTTCACAAAGATCTGCAT 83268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159120885824675