Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq528 159 8e-34 seq216 159 8e-34 seq15 154 4e-32 >seq528 Length=44320 Score = 159 bits (176), Expect = 8e-34 Identities = 171/226 (76%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| | |||||| || | ||| ||||| | ||| ||||| | || Sbjct 9235 ACGAAGACGAAGGACCAAGTGGAGTGTAGCTTCCTTTTGAATATTATAATCTTGAAGTGT 9294 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || || || |||||||||||||||| |||||| || || ||||| || Sbjct 9295 GCGACCATCTTCGAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGAATTCC 9354 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || || |||||||||||||||| ||| || ||||||| |||| || || | Sbjct 9355 TTCCTTATCCTGAATCTTTTGCTTCACAGATTCAATAGTGTCTGCATTTTCGACCTCAAG 9414 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTA 225717 ||||| ||||| || ||||| || || | || | ||||||| || Sbjct 9415 GGTGATGGTCTTTCCAGTCAATGTCTTCACAAAGATTTGCATTATA 9460 >seq216 Length=89640 Score = 159 bits (176), Expect = 8e-34 Identities = 156/201 (78%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 |||||| ||||| ||||| || | || ||||||| |||||| || ||| || | || Sbjct 83053 TCTCAGCACAAGATGGAGTGTTGCCTCCTTTTGGATATTGTAGTCTTGCAATGTGCGACC 83112 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | ||||| |||||||||||||||| |||||||| || |||||||||||||| Sbjct 83113 GTCTTCCAATTGCTTTCCAGCGAAGATAAGTCTCTGTTGGTCCGGAGGAATACCTTCCTT 83172 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||| ||||| ||||| || | || || ||||| | | |||| || || | ||||| Sbjct 83173 GTCTTGAATCTTCTGCTTAACTGACTCAATTGTGTCAGCGTTTTCAACCTCAAGGGTGAT 83232 Query 225678 CGTCTTGCCCGTCAAAGTTTT 225698 || || || ||||||||||| Sbjct 83233 GGTTTTTCCAGTCAAAGTTTT 83253 Score = 158 bits (174), Expect = 3e-33 Identities = 170/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| ||||| || | |||| ||||||||||| ||||| || | ||| Sbjct 83275 ACGAAGTCTCAACACAAGATGCAATGTGGCTTCTTTTTGGATGTTGTAGTCCTGGAGAGT 83334 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| |||||||| || || || || ||||| ||||||| ||| || || || || || || Sbjct 83335 TCTACCATCTTCGAGTTGTTTTCCTGCGAAAATAAGTCTTTGCTGATCCGGAGGGATTCC 83394 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| ||||| || ||||||||||||| ||| || ||||||| | |||| || || | Sbjct 83395 TTCCTTATCTTGAATTTTTTGCTTCACAGATTCAATTGTGTCTGCGTTTTCGACTTCGAG 83454 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || || || || ||||| || || | || | |||||| || Sbjct 83455 GGTAATTGTTTTTCCTGTCAATGTCTTCACAAAAATTTGCATGTT 83499 >seq15 Length=259596 Score = 154 bits (170), Expect = 4e-32 Identities = 168/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | |||||| || | ||| ||||| | ||| ||||| | || Sbjct 136017 ACGAAGACGAAGCACCAAGTGGAGTGTAGCTTCCTTTTGAATATTATAATCTTGAAGTGT 136076 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || || || |||||||||||||||| |||||| || || ||||| || Sbjct 136077 ACGACCATCTTCGAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGAATTCC 136136 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || || || ||||||||||||| ||||||||| |||| |||| || || | Sbjct 136137 TTCCTTATCCTGAATTTTTTGCTTCACAGATTCGATGGTATCTGCATTTTCGACCTCAAG 136196 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| ||||| || ||||| || || | || | ||||||| Sbjct 136197 GGTGATGGTCTTTCCAGTCAATGTCTTCACAAAGATTTGCATT 136239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192499189853930