Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq216 147 5e-30 seq15 104 5e-17 seq528 102 2e-16 >seq216 Length=89640 Score = 147 bits (162), Expect = 5e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | |||||||| | || | ||||||||||||||||| || | |||||| Sbjct 83279 AGTCTCAACACAAGATGCAATGTGGCTTCTTTTTGGATGTTGTAGTCCTGGAGAGTTCTA 83338 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || ||| || ||||| ||||| || ||||| |||| | |||||||||| Sbjct 83339 CCATCTTCGAGTTGTTTTCCTGCGAAAATAAGTCTTTGCTGATCCGGAGGGATTCCTTCC 83398 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || |||||||||||||| || |||| || | |||||| | || ||||| || ||| Sbjct 83399 TTATCTTGAATTTTTTGCTTCACAGATTCAATTGTGTCTGCGTTTTCGACTTCGAGGGTA 83458 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || | |||||||| || | ||||| || Sbjct 83459 ATTGTTTTTCCTGTCAATGTCTTCACAAAAATTTGCATGTT 83499 Score = 118 bits (130), Expect = 2e-21 Identities = 158/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| || |||||||| || || | ||| |||||||| ||||| || || || | || Sbjct 83053 TCTCAGCACAAGATGGAGTGTTGCCTCCTTTTGGATATTGTAGTCTTGCAATGTGCGACC 83112 Query 151949 ATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| | ||||| || ||||||||||| ||||| ||||||| | || |||||| Sbjct 83113 GTCTTCCAATTGCTTT--CCAGCGAAGATAAGTCTCTGTTGGTCCGGAGGAATACCTTCC 83170 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || |||||||| || || || || | ||| | |||| | | || || ||||| || Sbjct 83171 TTGTCTTGAATCTTCTGCTTAACTGACTCAATTGTGTCAGCGTTTTCAACCTCAAGGGTG 83230 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || | ||| ||||| |||| |||||| Sbjct 83231 ATGGTTTTTCCAGTCAAAGTTTTCACAAAGATCTGCAT 83268 >seq15 Length=259596 Score = 104 bits (114), Expect = 5e-17 Identities = 149/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || |||| || ||||| || || ||||| | || | |||||||| | Sbjct 136032 CAAG-TGGAGTGTAGCTTCCTTTTGAATATTATAATCTTGAAGTGTACGACCATCTTCGA 136090 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || ||||||||||| || || || || | | ||||||||||| || |||| Sbjct 136091 GTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTATCCTGAA 136150 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 ||||||| || |||| || | | | |||| | | || || ||||| || || || || | Sbjct 136151 TTTTTTGCTTCACAGATTCGATGGTATCTGCATTTTCGACCTCAAGGGTGATGGTCTTTC 136210 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || | |||||||| |||| |||||| Sbjct 136211 CAGTCAATGTCTTCACAAAGATTTGCATT 136239 >seq528 Length=44320 Score = 102 bits (112), Expect = 2e-16 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | || || |||| || ||||| || || ||||| | || | |||||| Sbjct 9245 AGGACCAAGTGGAGTGTAGCTTCCTTTTGAATATTATAATCTTGAAGTGTGCGACCATCT 9304 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || ||||||||||| || || || || | | ||||||||||| || Sbjct 9305 TCGAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTATCC 9364 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||||| || |||| || | |||||| | | || || ||||| || || || Sbjct 9365 TGAATCTTTTGCTTCACAGATTCAATAGTGTCTGCATTTTCGACCTCAAGGGTGATGGTC 9424 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTA 152108 || || || | |||||||| |||| |||||| || Sbjct 9425 TTTCCAGTCAATGTCTTCACAAAGATTTGCATTATA 9460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153789828925745