Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq216 114 3e-20 seq58 105 1e-17 >seq216 Length=89640 Score = 114 bits (126), Expect = 3e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || | | || ||||| || ||| ||||||||||||||||||||| Sbjct 83269 ACCACCACGAAGTCTCAACACAAGATGCAATGTGGCTTCTTTTTGGATGTTGTAGTCCTG 83328 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | ||||| || |||||||| || || || || | | ||| || || || Sbjct 83329 GAGAGTTCTACCATCTTCGAGTTGTTTTCCTGCGAAAATAAGTCTTTGCTGATCCGGAGG 83388 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||| ||||| || ||| || || | || || ||||| | |||||| Sbjct 83389 GATTCCTTCCTTATCTTGAATTTTTTGCTTCACAGATTCAATTGTGTCTGCGTTTTCGAC 83448 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 |||||| || || || || || ||||| ||||| || || || ||||| || Sbjct 83449 TTCGAGGGTAATTGTTTTTCCTGTCAATGTCTTCACAAAAATTTGCATGTT 83499 Score = 104 bits (114), Expect = 5e-17 Identities = 142/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCA-GCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 || |||||||| |||||||| |||| ||||| || || || | ||| || || || || Sbjct 83078 TCCTTTTGGATATTGTAGTCTTGCAAT-GTGCGACCGTCTTCCAATTGCTTTCCAGCGAA 83136 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGG 283026 ||| | | |||||||| |||||||| ||||||||||| ||||| ||| || || | Sbjct 83137 GATAAGTCTCTGTTGGTCCGGAGGAATACCTTCCTTGTCTTGAATCTTCTGC-TTAACTG 83195 Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAA 283086 || || ||||| | ||| || || || ||||| || || || |||||||| || | Sbjct 83196 ACTCAATTGTGTCAGCGTTTTCAACCTCAAGGGTGATGGTTTTTCCAGTCAAAGTTTTCA 83255 Query 283087 CGAATATCTGCAT 283099 | || |||||||| Sbjct 83256 CAAAGATCTGCAT 83268 >seq58 Length=166100 Score = 105 bits (116), Expect = 1e-17 Identities = 340/522 (65%), Gaps = 8/522 (2%) Strand=Plus/Minus Query 273609 GGAACGTTCGTAGACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGG 273668 || || ||||| ||||| || || ||||||||| | |||||| || || |||| Sbjct 92340 GGCACTTTCGTTGACCATCCAGTTCCAATACCGTCTGCACCATTGACAAGGCACATCGGA 92281 Query 273669 ATAATTGGGACATAATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAAC 273728 || || || ||||| | || ||||| ||| |||||| || | || ||||||| | Sbjct 92280 ATGATGGGAACATACCACTCAGGCTCGATTGGCATACCATCATCATCCAGATACTTCAGC 92221 Query 273729 AAAGCATCATCCGTATCAACGAAA-ACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAAAT 273787 || || || || ||||| | | || | | |||||||| || |||||||| Sbjct 92220 AATCTGTCGTCTTCTTCT-CGAAAGATCAGTCTTGCAAGCGGATTCAGCTTTGTGAAAAT 92162 Query 273788 GTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGG 273847 ||| | ||| |||| || ||||||||| ||| | | ||| || ||||| || Sbjct 92161 GTAACGAGCAGACGCAGCATCTTTGCCACCTGACAGACGTGTACCGAATTGACCAGAAGG 92102 Query 273848 CAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCC 273907 | || || ||||||||||| |||||| |||| | || | || || || || Sbjct 92101 AACAAGAAGATTGATGTTGTTGCTTCCGACGAAATCACGTGCAAGGTTAACAATCGTTGA 92042 Query 273908 CTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAACTG 273967 |||||| || || ||||| || || | ||| || | || ||| | ||| Sbjct 92041 CTGAAGTGACTGTTCACCGTGATGGTATGATGATACTTCTGCAACGTATCCAGAAAGCTG 91982 Query 273968 AGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACACCTTCCGCTG 274027 ||||| || | || || | | || ||||| || || ||| || | ||| || || Sbjct 91981 GGCAACTTTAATTTCATTCTTAAGATTACGCTTAAAGCAGGCATATAAAATCTTTCGTTG 91922 Query 274028 CGAGGGCTTGAACCCATCAACGACCGATGGAATA---CTGCGTTCCAAATCATACCGAGA 274084 ||||| || |||||||| || ||||||||| || | | | ||||| || || Sbjct 91921 TCCAGGCTTAAATCCATCAACAACAGATGGAATAGATCT-CATAC--AATCAGCACGTGA 91865 Query 274085 GAACAAAATCAGTTCCTTGTCAATGAAGTCAGGGACGGGAAC 274126 ||| || ||||| |||| |||||| || ||| ||||| Sbjct 91864 AAACTGGATAAGTTCTTTGTTAATGAAATCTGGGTATGGAAC 91823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046711103230130