Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq216 120 2e-22 seq528 102 6e-17 seq15 95.1 9e-15 >seq216 Length=89640 Score = 120 bits (132), Expect = 2e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| ||||||| ||||| ||| || || || || |||||||||||| ||||| Sbjct 83035 TTGCATTCCTCCTCTCAATCTCAGCACAAGATGGAGTGTTGCCTCCTTTTGGATATTGTA 83094 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | | ||| |||| |||| ||||| || || ||||| | | ||| || || Sbjct 83095 GTCTTGCAATGTGCGACCGTCTTCCAATTGCTTTCCAGCGAAGATAAGTCTCTGTTGGTC 83154 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | ||| | ||||||||| || ||||||||||| | || | || ||||| ||| Sbjct 83155 CGGAGGAATACCTTCCTTGTCTTGAATCTTCTGCTTAACTGACTCAATTGTGTCAGCGTT 83214 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||| | || || || ||||| || | || ||||| ||||| ||||| Sbjct 83215 TTCAACCTCAAGGGTGATGGTTTTTCCAGTCAAAGTTTTCACAAAGATCTGCAT 83268 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||||||||||| || || | ||| || |||||||||||||| || Sbjct 83266 CATACCACCACGAAGTCTCAACACAAGATGCAATGTGGCTTCTTTTTGGATGTTGTAGTC 83325 Query 44167 --GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 || ||||| | | || || || || || || || || || | | |||||||| Sbjct 83326 CTGGAGAGTT--CTACCATCTTCGAGTTGTTTTCCTGCGAAAATAAGTCTTTGCTGATCC 83383 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | ||| | |||||||| || || || ||||||| | | | || ||||| ||| | Sbjct 83384 GGAGGGATTCCTTCCTTATCTTGAATTTTTTGCTTCACAGATTCAATTGTGTCTGCGTTT 83443 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || || | ||||| || ||||| || | |||||||| || ||||||||| Sbjct 83444 TCGACTTCGAGGGTAATTGTTTTTCCTGTCAATGTCTTCACAAAAATTTGCATG 83497 >seq528 Length=44320 Score = 102 bits (112), Expect = 6e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGT-GCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 |||| ||| || || ||| |||||||| || || ||||| ||| ||| | || || Sbjct 9248 ACCAAGTGGAGTGTAGCT-TCCTTTTGAATATTATAATCTTGAAGTGTGCGACCATCTTC 9306 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || || || || || ||||| | | || ||||||| ||| | |||||||| ||| Sbjct 9307 GAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTATCCTG 9366 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||||| | | | || ||||| || ||| ||||| | || || ||||| Sbjct 9367 AATCTTTTGCTTCACAGATTCAATAGTGTCTGCATTTTCGACCTCAAGGGTGATGGTCTT 9426 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 ||| || | |||||||| ||||||||||| || Sbjct 9427 TCCAGTCAATGTCTTCACAAAGATTTGCATTAT 9459 >seq15 Length=259596 Score = 95.1 bits (104), Expect = 9e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGT-GCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGT 44186 ||||| ||| || || ||| |||||||| || || ||||| ||| || | || | Sbjct 136029 CACCAAGTGGAGTGTAGCT-TCCTTTTGAATATTATAATCTTGAAGTGTACGACCATCTT 136087 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 | || || || || || ||||| | | || ||||||| ||| | |||||||| ||| Sbjct 136088 CGAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTATCCT 136147 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 || || ||||||| | | | ||||| || || ||| ||||| | || || |||| Sbjct 136148 GAATTTTTTGCTTCACAGATTCGATGGTATCTGCATTTTCGACCTCAAGGGTGATGGTCT 136207 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || | |||||||| ||||||||||| Sbjct 136208 TTCCAGTCAATGTCTTCACAAAGATTTGCAT 136238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359981208432615