Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq216 203 8e-47 seq528 159 8e-34 seq15 159 8e-34 >seq216 Length=89640 Score = 203 bits (224), Expect = 8e-47 Identities = 174/215 (81%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||| || | ||||||||||| || |||||||| || |||| | ||||| Sbjct 83493 CAAATTTTTGTGAAGACATTGACAGGAAAAACAATTACCCTCGAAGTCGAAAACGCAGAC 83434 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||||| ||||| || || ||||||||||||||||| |||||| Sbjct 83433 ACAATTGAATCTGTGAAGCAAAAAATTCAAGATAAGGAAGGAATCCCTCCGGATCAGCAA 83374 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||| ||||| |||||||| ||||||||||| || ||||| || || ||| || Sbjct 83373 AGACTTATTTTCGCAGGAAAACAACTCGAAGATGGTAGAACTCTCCAGGACTACAACATC 83314 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||||||| | ||| |||||||||| |||||||| Sbjct 83313 CAAAAAGAAGCCACATTGCATCTTGTGTTGAGACT 83279 Score = 156 bits (172), Expect = 1e-32 Identities = 168/220 (76%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||||||| | || |||||||| |||||||| ||||| |||| | | ||| Sbjct 83265 CAGATCTTTGTGAAAACTTTGACTGGAAAAACCATCACCCTTGAGGTTGAAAACGCTGAC 83206 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||| || || || |||||||| ||||| ||||| || ||||||||||| || Sbjct 83205 ACAATTGAGTCAGTTAAGCAGAAGATTCAAGACAAGGAAGGTATTCCTCCGGACCAACAG 83146 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGC-CGATTATAACGT 178102 ||||||||||||| ||||| || | ||||| || | || |||| || || || | Sbjct 83145 AGACTTATCTTCGCTGGAAAGCAATTGGAAGACGGTCGCAC-ATTGCAAGACTACAATAT 83087 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||| || ||||||| |||||||| ||||| | ||| Sbjct 83086 CCAAAAGGAGGCAACACTCCATCTTGTGCTGAGATTGAGA 83047 Score = 102 bits (112), Expect = 2e-16 Identities = 154/226 (68%), Gaps = 11/226 (5%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||| || | || |||||||| || ||||| || || |||| | |||| Sbjct 83037 CAAATTTTTGTGAAGACATTGACTGGAAAAACAATTACCCTTGAAGTCGAAAACGCAGAT 82978 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGG-------- 178035 ||||| || || ||||| ||||||||||| ||||| || || ||||||| Sbjct 82977 ACCATTGAATCTGTGAAACAGAAGATTCAGGATAAAGAGGGTATTCCTCCGGNNNNNNNN 82918 Query 178036 ---ACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 ||||| || ||||| || || || |||||||| || || | Sbjct 82917 NNNNNNNNNNNNNNNNNATCTTTGCTGGAAAGCAACTTGAGGATGGAAGAACCCTCCAGG 82858 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 | || ||| | || |||||| | || |||||||||| |||||||| Sbjct 82857 ACTACAACATTCAGAAAGAAGCCACTTTGCATCTTGTGTTGAGACT 82812 >seq528 Length=44320 Score = 159 bits (176), Expect = 8e-34 Identities = 159/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| || | || ||||| || |||||||| ||||| |||| ||||| Sbjct 9453 CAAATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTCGAAAATGCAGAC 9394 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || |||||||||||||| || |||||||| ||||| || || ||| Sbjct 9393 ACTATTGAATCTGTGAAGCAAAAGATTCAGGATAAGGAAGGAATTCCTCCAGATCAACAA 9334 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||||| |||||||| ||||||||||| | || ||| |||||||| | Sbjct 9333 AGACTTATCTTCGCTGGAAAACAACTCGAAGATGGTCGCACACTTCAAGATTATAATATT 9274 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||| | ||||| || |||| Sbjct 9273 CAAAAGGAAGCTACACTCCA-CTTG 9250 >seq15 Length=259596 Score = 159 bits (176), Expect = 8e-34 Identities = 159/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| || | || ||||| || |||||||| ||||| |||| |||| Sbjct 136235 CAAATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTCGAAAATGCAGAT 136176 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || ||||| |||||||| || |||||||| ||||| || || ||| Sbjct 136175 ACCATCGAATCTGTGAAGCAAAAAATTCAGGATAAGGAAGGAATTCCTCCAGATCAACAA 136116 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||||| |||||||| ||||||||||| | || ||| |||||||| | Sbjct 136115 AGACTTATCTTCGCTGGAAAACAACTCGAAGATGGTCGTACACTTCAAGATTATAATATT 136056 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||| | ||||| || |||| Sbjct 136055 CAAAAGGAAGCTACACTCCA-CTTG 136032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203698889221430