Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq93 116 4e-21 >seq93 Length=103736 Score = 116 bits (128), Expect = 4e-21 Identities = 373/568 (66%), Gaps = 27/568 (5%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 ||||| || ||||| |||| |||||| |||| || | ||| ||||| || || Sbjct 84864 AGACAAGCAAAGTCCGTGTGTAATCCTTCATCTCGAGAAATCAATTCATTGGAGAAGGTC 84923 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 || || ||||| |||| ||||| | ||| || || | | || || || |||| Sbjct 84924 AATCCAGGCATCAAACCTCTCTTCTTCATCCAAAAGATGGAACAGAAAGATCCACTAAAG 84983 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378 || ||||| || ||| | ||||| || || |||||||| || || || |||| Sbjct 84984 AAGATACCTTCCACACAAGCAAAGGCAATCAATCGTTCAGCAAACA-AG-----TTATC- 85036 Query 16379 CGA----ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATC-GTTTCTA 16433 ||| ||||||||| |||| || || | ||| | || | | || || | Sbjct 85037 CGAGTTGATCCATTTCAAAGCCCAACGAGCCTTCT-TTTGAACGGATGGAACAGTATCAA 85095 Query 16434 TGGCCTTAAACA----ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGT 16489 |||| || || | || ||| | | || || || | || || || ||||| || Sbjct 85096 TGGCATTGAAGAGACGATGTCTTTCTCTCGTG----TCCTTAATGTAGGTTTCAATTAG- 85150 Query 16490 AAACTG--TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATC 16547 | || ||||| |||| || || ||||| ||||| || || ||||||||||| |||| Sbjct 85151 -AGTTGAATACATCTCTGCATGAATATTCTCAATGGCAATTTGGAATCCATAGAAACATC 85209 Query 16548 GAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATAC 16607 || || | ||||| ||||| | |||| ||| || |||||||||||| |||| Sbjct 85210 TGGCTTCAGGAATTTGAACTTCAGCCATAAATTGTTGACACAAGTTCTCATTCACAATAC 85269 Query 16608 CGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAA 16667 | || |||||||| || ||||| | ||| ||||| | || ||| | | | | Sbjct 85270 CATCGGAGGCAGCAAAGAAGGCCAAAACAGTCTTGATGAAGTGTTGTTCATTGGTATTGA 85329 Query 16668 GAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCA-AAAGCTA 16726 || | | ||| | | |||| || | |||||||||||| | ||||| |||| | Sbjct 85330 GAGTTTCCCATTGAGCAATATCTGTGTGGAGATCCACTTCTTCAGCAGTCCAGAAAGAT- 85388 Query 16727 GCCACTGCCTTTTTATACATTTTCCAAA 16754 |||| ||||| || ||||| | ||||| Sbjct 85389 GCCATGGCCTTCTTGTACATCTCCCAAA 85416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511410730601680