Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq157 131 1e-25 >seq157 Length=153911 Score = 131 bits (144), Expect = 1e-25 Identities = 342/516 (66%), Gaps = 8/516 (2%) Strand=Plus/Minus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 || || || ||||| ||||| || | || |||| ||||| ||||| || |||||||| Sbjct 125432 ACTTGTGCCATCATACAAGTCAATAAAGCATAGGATGCAATATTAAAAGGTACTCCTAAA 125373 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACA--GGAAAGCTT-TCCATC---ACAGACA 101869 ||||||||| |||||||||||||| |||||| || ||| | ||| | || Sbjct 125372 CCCATATCACATGATCTTTGATACATTTGACAACTCAATTCTTGTGTATCTGTATCCACC 125313 Query 101870 TAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTC 101929 | ||||||| ||||| ||||||||| || | |||||| ||| | |||||||||||| Sbjct 125312 CAGAATTGACATAATAAATGACAAGGTGGAAGTGCCATTTGAGGTAAATCTGAAACATTC 125253 Query 101930 CAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGT 101989 || ||| | | | || || | || || || || || ||||| | ||| | Sbjct 125252 CATGCAGAGAGAATAATTCTACGATTGGTTGGATTGTGACGAATGGTATCGACACACTTT 125193 Query 101990 TTTAATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCG 102049 || ||||| |||| |||| | ||||| | || ||| | ||| || Sbjct 125192 TTCAATTGATCAATACCTTTTTGAGAATAATTAGTATGCATGGTTTCATAGTGTGCACCC 125133 Query 102050 AAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAA 102109 |||| ||||| ||||||||||| || ||||| | ||| || || | | | || Sbjct 125132 CAATGTCTCCATTGAAATCCATAGACTGGTCCTAAATCCATCTCTTCACGATGAGTCAAT 125073 Query 102110 CCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCT 102169 |||| ||||||| || || | | |||| ||||||||||||| || | || Sbjct 125072 CCAATGGAATCTAAATATTGTCGACTTGCATTGCCATCCCAAATGTGAACATCTTGTGAA 125013 Query 102170 GATAG-CTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACC 102228 || || | ||| | ||| || ||| ||||| | | ||| | ||||||| Sbjct 125012 GAGAGAGTACGTGC-ATTGGTATCACCAGAGATGAACCAAAGTAATTCCTTTGCAACACC 124954 Query 102229 TCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAA 102264 | ||||||| |||||||| || || | ||| ||||| Sbjct 124953 TTTCCAAAAGACTCTCTTGGTGGTGAGAAGAGGAAA 124918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361248672822074