Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq36 210 3e-49 seq93 197 2e-45 seq40 82.4 9e-11 >seq36 Length=122865 Score = 210 bits (232), Expect = 3e-49 Identities = 822/1277 (64%), Gaps = 28/1277 (2%) Strand=Plus/Plus Query 53383 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGC 53442 |||| ||| || || || |||||||| ||| || | ||||||||| || ||||| Sbjct 115109 TCCTTGATAGGTCTCATAAGGTCCTTCTGTCTTGGCAACTTCACAACTGGCTGTCAATGC 115168 Query 53443 ACCGTAATAAATGGTTTCGAAGATCTTCTTATTT--AGATCTTGTGCTTCCAGGCTATCA 53500 | | |||| || |||||||| || |||| || | |||||| ||||| || || Sbjct 115169 AGCAAAATATATTGTTTCGAAAAT-TTCTCGATTCAAAATCTTG-GCTTCTTCACTCTCG 115226 Query 53501 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 53560 || ||| || | ||||| || || || ||||| |||||||| | ||| || || Sbjct 115227 AAGGGAAGATGCATCTTGATAAAGGCATCGGCCAATCCCTGAACACCCAAACCAATGGGA 115286 Query 53561 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 53620 | ||||||| ||||| || |||||| || ||||||||||| | || || || Sbjct 115287 CGATGTCTCATATTACTCTTTCTAGCTTCCTCAACTGGATAATAATTCTTGTCAATGATC 115346 Query 53621 TTATTGAGGTTTCTGA---CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT 53677 || || | || || ||||| ||||| | || || || | ||| | Sbjct 115347 TTGTTCAAATTCTTGGTGGCAATT---TTGACAATTTCAAACAATTGTTCATGATCGTAG 115403 Query 53678 -----TGTCCATCT-ATT-ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGC 53730 |||| ||| ||| ||| || | | ||||||| ||||| ||||| || || Sbjct 115404 GTACGTGTCG-TCTCATTGACATACTTTGGAAGTGCAATACTTGCCAAGTTACACACAGC 115462 Query 53731 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGT 53790 ||| |||| | | | | |||| || || ||||| || | || | ||||| || Sbjct 115463 TACTTCATCTGGAGCTGTGTATTCAATAATTTCAGTACACAAGTTGGAGGATTTGATCGT 115522 Query 53791 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGT 53850 ||| | |||||||||||| ||| | ||||| |||||||||||||| ||| | || Sbjct 115523 TCCAAGATTTTGTTGATTTGATTTTCTATTACATGCATCCTTATAAAGCATGTAAGGAAC 115582 Query 53851 ACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATA-G 53909 |||||| ||||| || | || ||||| || ||| | | |||| | | | | Sbjct 115583 ACCAGTCTCAATTTGTGCCTCAATAATTGCAAACCAAAGCTCTTGAGCACGAACGACACG 115642 Query 53910 ATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAA 53969 || | | | || | || || | ||||||| | |||||| || ||||| | Sbjct 115643 GCGTGCACGACCCTCCT-TCTCATAACGCAAATACAATTCATTAAACTCTTCACCCCACA 115701 Query 53970 CATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA 54029 ||| | | ||||||| ||||| ||||| | | ||||| | || ||||||| Sbjct 115702 CATCAGCAAGTCCAGGAGCTTCATTAGGACAAAAGAGTGACCAATGAGAATCCTCCTTCA 115761 Query 54030 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTT 54089 ||| | |||||| | |||| | ||| | | | | ||| | ||||| | || | || Sbjct 115762 CTCTCTCCATAAACAAATCATTCACCCACAAACCCAAAAACAAATCTCGAGCTCGAATTT 115821 Query 54090 CCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 54149 |||| ||||| ||||||||| | | ||| | || | | |||||| |||||||| || | Sbjct 115822 CCTCCTTTCCAGTATTCTTTCTCAAATCTAAAAAATCAAAAATATCGGAATGCCAAGGCT 115881 Query 54150 CCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGG 54209 |||| || | || | |||| ||||| || || ||||| | ||| | || | Sbjct 115882 CCAAATAAACGGCAAAGGCTCCTTTTCGTTTACCACCACCTTGATCCACGTAACGGGCAG 115941 Query 54210 TGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGA 54269 ||| || | || | | ||| ||||| | |||||||| | || ||||| || | Sbjct 115942 TGTCGTTGAATACACGAAGCATGGGAATGAGTCCATTGGAGGTTCCGTTGGTTCCTCGAA 116001 Query 54270 TATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAG 54329 | ||| |||| ||||||||| ||| || || | || || || || || | || | Sbjct 116002 TGTAGGATCCAGAGGCACGAATGTTATGAACGGACAAGCCGATACCACCAGCACTCTTGG 116061 Query 54330 AGATTAATGCGCATCGT-TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATG 54388 | || || || || ||| || | ||||| || || || || ||| || ||||| Sbjct 116062 ATATCAAGGCACA-CGTCTTGAGTGTATCGTAAATACCTGAAATGGAATCGTCTTTCATG 116120 Query 54389 TTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGA 54448 | || || || | |||||| || ||| || ||||| || | |||||| Sbjct 116121 GCCACTAAGAAGCAAGAACTCATTTGAGGAGTGGGAGTACCAGCATTGAAGAGAGTAGGA 116180 Query 54449 GAAGCGTGCGTAAACCATTTTTCAG---AAAGTAGATTGTACGTCTCGATAGCTGAGTCT 54505 || ||||| | ||| | ||| ||||| | ||| || || ||||| || Sbjct 116181 GAGGCGTGGATGAAC---ATACCAGTGCTAAGTAATTCGTAGGTTTCAATAGCCTTCTCA 116237 Query 54506 ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACG 54565 ||||| | |||||| || | |||||||| |||||||| ||||||| ||| | Sbjct 116238 ATATCGGAACCATGAATGCCCAAACTCACACGCATGAACATGTGTTGAGGTCGTTCGGCA 116297 Query 54566 ATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 54625 || | | ||| ||||||||| | |||| | ||| ||||| ||||| || | | Sbjct 116298 ATAACATCTCCGAGTTTGAGCAAGTAGCTTCTTTCAAGAGTCTTAAAGCCAAAGTAATCG 116357 Query 54626 TATGAAAAGTCTCGTTC 54642 || | | |||||||| Sbjct 116358 AATTGATAATCTCGTTC 116374 >seq93 Length=103736 Score = 197 bits (218), Expect = 2e-45 Identities = 399/584 (68%), Gaps = 6/584 (1%) Strand=Plus/Plus Query 24149 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 24208 ||||| || || |||| | ||| ||||| ||||| || || | ||| ||||| | || Sbjct 84881 GTGTAATCCTTCATCTCGAGAAATCAATTCATTGGAGAAGGTCAATCCAGGCATCAAACC 84940 Query 24209 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 24268 | ||| || | |||||| ||||| || |||||| |||||| || ||||| || Sbjct 84941 TCTCTTCTTCATCCAAAAGATGGAACAGAAAGATCCACTAAAGAAGATACCTTCCACACA 85000 Query 24269 CGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGT-ATCCACTTTTGAGCCC 24327 ||||||||||| | || ||| || ||| | | | | ||||| || ||||| Sbjct 85001 AGCAAAGGCAATCAATCGTTCAGCA-AACAAGTTATCCGAGTTGATCCATTTCAAAGCCC 85059 Query 24328 AATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttttt 24387 || |||||||||| || | || | || || || ||||| |||||| | | ||| Sbjct 85060 AACGAGCCTTCTTTTGAACGGATGGAACAGTATCAATGGCATTGAAGAGACGATGTCTTT 85119 Query 24388 CATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTT 24447 | | | || |||| || || ||||| | | |||||| || | |||||| || | Sbjct 85120 CTCTCGTGTCCTTAATGTAGGTTTCAATTAGAGTTGAATACATCTCTGCATGAATATTCT 85179 Query 24448 CAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACA-A 24506 ||||||| ||||| ||||| ||||||||||| || || | ||| || ||||| | || | Sbjct 85180 CAATGGCAATTTGGAATCCATAGAAACATCTGGCTTCAGGAATTTGAACTTC-AGCCATA 85238 Query 24507 AATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 24566 ||| ||| || || |||||||| || || || ||| ||||| || ||||| ||| Sbjct 85239 AATTGTTGACACAAGTTCTCATTCACAATACCATCGGAGGCAGCAAAGAAGGCCAAAACA 85298 Query 24567 TGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGA 24625 || || || | || ||| | |||| || || | | ||| | | |||||| | Sbjct 85299 GTCTTGATGAAGTGTTGTTCAT-TGGTATTGAGAGTTTCCCATTGAGCAATATCTGTGTG 85357 Query 24626 TATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 24685 | |||||||||||| | ||||| || |||||| ||||| || ||||| | ||| | Sbjct 85358 GAGATCCACTTCTTCAGCAGTCCAGAAAGATGCCATGGCCTTCTTGTACATCTCCCAAAC 85417 Query 24686 GTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 24729 | |||| || ||||| || | ||| || | || |||||||| Sbjct 85418 CTTTTGATGTTCGATTGGGAAGAGAACGAAACGATGTGGATTTT 85461 >seq40 Length=471424 Score = 82.4 bits (90), Expect = 9e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 71765 GTGATAGGTATTGATGAAGGACAGTTCTTTCCAGACATTGTTGAATTCTGTG-AGCGTAT 71823 || || || ||||||||||| || |||||||| || | ||||| || |||| ||| | Sbjct 411274 GTCATTGGAATTGATGAAGGTCAATTCTTTCCTGATTTAGTTGACTTTTGTGAAGCAGCT 411333 Query 71824 GGCAAACGAAGGAAAAATAGTTATAGTAGCCGCACTCGATGGGACATTTCAACGTAAACC 71883 ||||| | ||| ||||| || || || ||| | ||||| || || ||| | ||||| Sbjct 411334 -GCAAATGGAGGTAAAATTGTGATTGTGAGCGCCTTGGATGGAACTTTCCAAAGAAAACC 411392 Query 71884 GTTTAATAATATCTTGGATCTTATTCCATTATCTGAAATGGTGGTAAAACTAACTGCAGT 71943 ||| | | ||||| | | |||||| | |||||| || || ||| | | || || Sbjct 411393 TTTTGGTGACGTCTTGCGTTTGATTCCAATGGCTGAAAGTGTTGTGAAATTGAAGGCTGT 411452 Query 71944 GTGTATGAAATGCTTTAAGGAGGCGTCCTTTTCTAAACG 71982 || ||| |||| || || || | ||| ||||||| Sbjct 411453 TTGCATGGTTTGCTGCAAAGATGCTGCTTTTACTAAACG 411491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593717340047520