Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq82 105 6e-18 seq42 96.9 3e-15 seq38 91.5 1e-13 seq76 89.7 4e-13 seq29 82.4 7e-11 >seq82 Length=211372 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | || || ||||| || || ||||| || || ||| || Sbjct 147933 AATGCAAATTTTCGTTAAGACCTTGACCGGTAAGACCATCACTTTGGAGGTCGAATCCAA 147874 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | ||| ||| ||| || || |||||| | || |||||| Sbjct 147873 CGACACCATCGAGAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATTCCTCCAGATCA 147814 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||||||| | |||||||| || || ||| |||||||| || ||| || | || ||||| Sbjct 147813 ACAAAGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGCAGAACCTTGTCTGACTACAA 147754 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| ||||||||||| | ||| |||| || |||| ||||||| Sbjct 147753 CATTCAAAAGGAATCTACATTGCACTTGGTCTTGAGATTGAGAGGAGG 147706 >seq42 Length=292872 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | ||||| ||||| ||||| |||||||| ||| ||| || Sbjct 166167 AATGCAAATCTTTGTTAAAACTTTGACTGGCAAGACCATTACATTGGAAGTCGAATCCAA 166226 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | ||| ||| || ||||| ||||| | || ||| || Sbjct 166227 TGATACCATCGAGAATGTCAAGTCAAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCA 166286 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||||||| | || || || || || ||| |||||||| | ||| | |||||||||| Sbjct 166287 ACAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGAAGAACCCTCTCCGATTACAA 166346 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || || |||||||||||| | || || |||| | ||||| Sbjct 166347 CATTCAAAAAGAGTCTACTCTTCACCTTGTTTTGAGATTGAGGGGAGG 166394 >seq38 Length=237352 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 ||||||||| ||||| | |||||| | || || | ||| || || || || || Sbjct 109522 AAAATGCAATTATTCGTTAAAACACTTACAGGTAGAACAATCACATTGGATGTTGAGTCC 109463 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 || || | | || |||| || ||||| | ||||| ||||| | || | ||| Sbjct 109462 AATGACTCGATTGAGAATGTTAAACAGAAAATCACAGATAAGGAAGGCATTCCAGCTGAT 109403 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 |||||| | | || | ||| || |||||| | || ||| | |||| | | |||||| Sbjct 109402 CAACAACGTTTGATTTATGCTGGAAAACAATTAGAGGATGGAAGAACTTTATCGGATTAC 109343 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||| | || ||||| ||||||||||| ||||||| ||||||| || || Sbjct 109342 AATGTACAAAAGGATGCTACTCTTCACTTGGTGTTGAGATTACGTGGTGG 109293 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 |||||||||||| |||||||||| || || ||| |||| ||| | |||| || ||| Sbjct 109177 GATCAACAAAGAATTATCTTTGCTGGTAAGCAATTGGAGGATGGAAGAACTTTGAGCGAC 109118 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||||| ||||| ||||| || ||||| ||| |||| || Sbjct 109117 TACAACATTCAAAAGGATTCCACTCTACACTTGGTTTT 109080 >seq76 Length=223365 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || |||||| | || ||||||||||||| | || ||||| || || ||| |||| Sbjct 84421 GACAAGGAAGGTATTCCTCCAGATCAACAAAGATTGATTTTTGCTGGTAAGCAATTGGAG 84362 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| || ||| || | || ||||| ||||| |||||||| ||||| ||| |||| || Sbjct 84361 GATGGCAGAACATTGTCTGACTACAACATTCAAAAGGAATCCACTCTCCACTTGGTCTTG 84302 Query 29175 CGATTACGAGGAGG 29188 |||| |||| || Sbjct 84301 AGATTGAGAGGTGG 84288 >seq29 Length=427163 Score = 82.4 bits (90), Expect = 7e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 |||||||||||||| |||||||| || || ||| | |||||| | ||| || |||| Sbjct 48669 GATCAACAAAGACTCATCTTTGCCGGAAAGCAATTAGAAGATGGAAGAACCTTGTCCGAC 48728 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||||| ||||| |||||||| ||||| ||| Sbjct 48729 TACAACATTCAAAAGGAATCCACTCTCCAC 48758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428333003521970