Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq42 98.7 8e-16 seq29 95.1 1e-14 seq26 95.1 1e-14 seq82 84.2 2e-11 >seq42 Length=292872 Score = 98.7 bits (108), Expect = 8e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCC 21037 ||| ||||| ||||||||||| || || | |||||| | || |||| || || || Sbjct 166365 AGTAGACTCTTTTTGAATGTTGTAATCGGAGAGGGTTCTTCCATCTTCCAATTGCTTACC 166306 Query 21038 CGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTT 21097 || |||| | ||| || ||||| || | ||||||||| || ||||||| || Sbjct 166305 AGCGAAAATCAATCTTTGTTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTTTGACTT 166246 Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGT 21157 || | ||| |||||| || || ||||| |||||||||||||| || || || Sbjct 166245 GACATTCTCGATGGTATCATTGGATTCGACTTCCAATGTAATGGTCTTGCCAGTCAAAGT 166186 Query 21158 TTTGACAAATATTTGCATT 21176 ||| ||||| ||||||||| Sbjct 166185 TTTAACAAAGATTTGCATT 166167 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || || | |||| ||||| || || || ||||||||||| || || | | Sbjct 165938 CCACCTCTGAGTCTCAAAACCAAGTGCAATGTTGATTCTTTTTGAATGTTGTAATCAGAC 165879 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | |||| |||| || | || || || ||| | || ||||| || ||||| || Sbjct 165878 AAGGTTCTTCCGTCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGGA 165819 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||||||| ||| || | | | |||||| || ||| Sbjct 165818 ATTCCTTCCTTGTCTTGGATCTTTGATTTAACGTTTTCAATGGTATCATTGGACTCAACC 165759 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||||||||| ||||| || ||||| || || |||||||| Sbjct 165758 TCAAGAGTAATGGTCTTTCCGGTCAAGGTTTTAACGAAGATTTGCAT 165712 >seq29 Length=427163 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || ||||| || | || | |||||| |||||||||||||| ||||| | | Sbjct 48781 CCACCTCTGAGTCTGAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAC 48722 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | |||| | || || | || || || ||| | || ||||| || || || || Sbjct 48721 AAGGTTCTTCCATCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGATCAGGTGGA 48662 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| |||||| | ||| || || || || | Sbjct 48661 ATTCCTTCCTTGTCTTGGATCTTGCTTTTCACGTTCTCGATTGTGTCGTTGGATTCGACT 48602 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 || | || || |||||||| ||||| || ||||| || |||||||| |||| Sbjct 48601 TCAAGAGTGATAGTCTTGCCAGTTAAAGTCTTGACGAAGATTTGCATGTTGA 48550 >seq26 Length=133099 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 20966 CACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTC 21025 ||||| |||||| || || ||||| |||| | | || || | || |||| | ||||| Sbjct 73271 CACCAAATGCAAGGTAGAATCCTTCTGAACGCTGTAATCAGACAAGGTTCTTCCATCCTC 73212 Query 21026 CAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGC 21085 | ||||| || || |||| | || || || || | || | |||||||| ||||| Sbjct 73211 TAATTGTTTTCCTGCGAAAATCAATCGTTGTTGATCGGCTGGAATCCCTTCCTTATCGGC 73152 Query 21086 GATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTT 21145 || || || || | ||| | ||| || ||| ||||| |||||||||||| Sbjct 73151 TATTTTGCTCTTGACGTTCTCGATCGAGTCATTGGACTCTACTTCCAAGGTAATGGTCTT 73092 Query 21146 GCCGGTTAACGTTTTGACAAATATTTGCATTTTGAAT 21182 || || || ||||| ||||| |||||||| |||||| Sbjct 73091 ACCAGTCAAGGTTTTCACAAAGATTTGCATGTTGAAT 73055 >seq82 Length=211372 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || || | |||| ||||| || || |||||||||||||| ||||| | | Sbjct 147706 CCTCCTCTCAATCTCAAGACCAAGTGCAATGTAGATTCCTTTTGAATGTTGTAGTCAGAC 147765 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | |||| | | || |||| || || || ||| | || | ||| || || || || Sbjct 147766 AAGGTTCTGCCATCTTCCAATTGCTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGA 147825 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| || || | ||| || || || || Sbjct 147826 ATACCTTCCTTGTCTTGAATCTTTGACTTGACATTCTCGATGGTGTCGTTGGATTCGACC 147885 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAAT 21182 |||| || |||||||| ||||| || || || || || ||||||||| ||||| Sbjct 147886 TCCAAAGTGATGGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCATTGTGAAT 147939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422256246032984