Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq82 118 9e-22 seq42 109 5e-19 seq76 98.7 8e-16 seq29 96.9 3e-15 seq38 95.1 1e-14 >seq82 Length=211372 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | || || ||||| || || ||||| || || ||| || Sbjct 147933 AATGCAAATTTTCGTTAAGACCTTGACCGGTAAGACCATCACTTTGGAGGTCGAATCCAA 147874 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || ||||| ||| ||| || || |||||| | || |||||| Sbjct 147873 CGACACCATCGAGAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATTCCTCCAGATCA 147814 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||||||| | |||||||| || || |||||||||||| || ||| || | || ||||| Sbjct 147813 ACAAAGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGCAGAACCTTGTCTGACTACAA 147754 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||||||||||| | ||| |||| || |||| ||||||| Sbjct 147753 CATTCAAAAGGAATCTACATTGCACTTGGTCTTGAGATTGAGAGGAGG 147706 >seq42 Length=292872 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | ||||| ||||| ||||| |||||||| ||| ||| || Sbjct 166167 AATGCAAATCTTTGTTAAAACTTTGACTGGCAAGACCATTACATTGGAAGTCGAATCCAA 166226 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || ||||| ||| || ||||| ||||| | || ||| || Sbjct 166227 TGATACCATCGAGAATGTCAAGTCAAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCA 166286 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||||||| | || || || || || |||||||||||| | ||| | |||||||||| Sbjct 166287 ACAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGAAGAACCCTCTCCGATTACAA 166346 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| || |||||||||||| | || || |||| | ||||| Sbjct 166347 CATTCAAAAAGAGTCTACTCTTCACCTTGTTTTGAGATTGAGGGGAGG 166394 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| |||||| | || |||||||||| | | || ||||| || |||||||||||| Sbjct 166033 GATAAGGAAGGTATTCCACCAGATCAACAACGTTTGATTTTTGCTGGTAAACAATTGGAA 166092 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || | |||| | |||| ||||| |||||||||||||| || | ||| | || | Sbjct 166093 GACGGAAGAACTCTCTCCGACTACAACATTCAAAAGGAATCCACATTGCACCTTGTTCTT 166152 Query 25248 CGATTACGAGGAGG 25261 |||| ||||||| Sbjct 166153 AGATTGAGAGGAGG 166166 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||||||| | | || ||||| || |||||||||||||| | ||| || |||| Sbjct 165598 GATCAACAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGAAGAACCTTGTCCGAC 165657 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| || ||||||||||| ||||| ||| |||| || |||| |||| || Sbjct 165658 TACAACATCCAAAAGGAATCCACTCTCCACTTGGTCTTGAGATTGAGAGGTGG 165710 >seq76 Length=223365 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || |||||| | || ||||||||||||| | || ||||| || || |||||||| Sbjct 84421 GACAAGGAAGGTATTCCTCCAGATCAACAAAGATTGATTTTTGCTGGTAAGCAATTGGAG 84362 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| || ||| || | || ||||| |||||||||||||| ||||| ||| |||| || Sbjct 84361 GATGGCAGAACATTGTCTGACTACAACATTCAAAAGGAATCCACTCTCCACTTGGTCTTG 84302 Query 25248 CGATTACGAGGAGG 25261 |||| |||| || Sbjct 84301 AGATTGAGAGGTGG 84288 >seq29 Length=427163 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | ||||| ||||| || || ||||| || ||| ||| | Sbjct 49048 AATGCAAATTTTCGTGAAAACTTTGACAGGAAAGACCATCACTTTGGAAGTTGAATCTAA 49107 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | ||||| ||| ||| ||||| || || | || |||||| Sbjct 49108 CGACACAATCGAGAACGTCAAGTCAAAGATTCAAGATAAGGAGGGGATTCCACCAGATCA 49167 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||| | | || || || || || |||||||||||| || ||| | |||||||||| Sbjct 49168 ACAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGCAGAACCCTTTCCGATTACAA 49227 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||||||||| ||||||||| | || | ||||| |||| || Sbjct 49228 CATCCAAAAGGAATCAACTCTTCACCTTGTTCTGAGATTAAGAGGTGG 49275 Score = 91.5 bits (100), Expect = 1e-13 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 |||||||||||||| |||||||| || || ||||| |||||| | ||| || |||| Sbjct 48669 GATCAACAAAGACTCATCTTTGCCGGAAAGCAATTAGAAGATGGAAGAACCTTGTCCGAC 48728 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||||| |||||||||||||| ||||| ||| Sbjct 48729 TACAACATTCAAAAGGAATCCACTCTCCAC 48758 >seq38 Length=237352 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 ||||||||| ||||| | |||||| | || || | ||| || || || || || Sbjct 109522 AAAATGCAATTATTCGTTAAAACACTTACAGGTAGAACAATCACATTGGATGTTGAGTCC 109463 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 || || | | || | || || ||||| | ||||| ||||| | || | ||| Sbjct 109462 AATGACTCGATTGAGAATGTTAAACAGAAAATCACAGATAAGGAAGGCATTCCAGCTGAT 109403 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 |||||| | | || | ||| || |||||||| || ||| | |||| | | |||||| Sbjct 109402 CAACAACGTTTGATTTATGCTGGAAAACAATTAGAGGATGGAAGAACTTTATCGGATTAC 109343 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||| | |||||||| ||||||||||| ||||||| ||||||| || || Sbjct 109342 AATGTACAAAAGGATGCTACTCTTCACTTGGTGTTGAGATTACGTGGTGG 109293 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 |||||||||||| |||||||||| || || |||||||| ||| | |||| || ||| Sbjct 109177 GATCAACAAAGAATTATCTTTGCTGGTAAGCAATTGGAGGATGGAAGAACTTTGAGCGAC 109118 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 ||||| ||||||||||| || ||||| ||| |||| || Sbjct 109117 TACAACATTCAAAAGGATTCCACTCTACACTTGGTTTT 109080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410793926219636